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AT1G09770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cell division cycle 5
Curator
Summary (TAIR10)
Member of MYB3R- and R2R3- type MYB- encoding genes. Essential for plant innate immunity. Interacts with MOS4 and PRL1.
Computational
Description (TAIR10)
cell division cycle 5 (CDC5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to bacterium, defense response to fungus, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3351 (InterPro:IPR021786), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 13137 Blast hits to 10813 proteins in 768 species: Archae - 14; Bacteria - 356; Metazoa - 3570; Fungi - 914; Plants - 4936; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink).
Protein Annotations
BioGrid:22747eggNOG:COG5147eggNOG:KOG0050EMBL:AC000132EMBL:AK316890EMBL:AY093057EMBL:AY519553
EMBL:BT008801EMBL:CP002684EMBL:D58424EnsemblPlants:AT1G09770EnsemblPlants:AT1G09770.1entrez:837506Gene3D:1.10.10.60
GeneID:837506Genevisible:P92948GO:GO:0003677GO:GO:0003700GO:GO:0005681GO:GO:0006281GO:GO:0006351
GO:GO:0006355GO:GO:0006397GO:GO:0007049GO:GO:0008380GO:GO:0009507GO:GO:0009870GO:GO:0010204
GO:GO:0042742GO:GO:0045087GO:GO:0050832Gramene:AT1G09770.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF559HOGENOM:HOG000182446
InParanoid:P92948IntAct:P92948InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930InterPro:IPR021786iPTMnet:P92948
KEGG:ath:AT1G09770KO:K12860ncoils:CoilOMA:NPEESMGPaxDb:P92948Pfam:P92948Pfam:PF11831
Pfam:PF13921Pfscan:PS51294PhylomeDB:P92948PIR:F86231PRIDE:P92948PRO:PR:P92948PROSITE:PS51294
ProteinModelPortal:P92948Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_172448.1SMART:SM00717SMR:P92948STRING:3702.AT1G09770.1
SUPFAM:SSF46689TAIR:AT1G09770tair10-symbols:ATCDC5tair10-symbols:ATMYBCDC5tair10-symbols:CDC5UniGene:At.278UniProt:P92948
Coordinates (TAIR10) chr1:+:3162002..3165122
Molecular Weight (calculated) 95771.80 Da
IEP (calculated) 6.73
GRAVY (calculated) -0.94
Length 844 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT EWTREEDEKL LHLAKLLPTQ WRTIAPIVGR TPSQCLERYE
101: KLLDAACTKD ENYDAADDPR KLRPGEIDPN PEAKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR LASLQKRREL KAAGIDGRHR
201: KRKRKGIDYN AEIPFEKRAP AGFYDTADED RPADQVKFPT TIEELEGKRR ADVEAHLRKQ DVARNKIAQR QDAPAAILQA NKLNDPEVVR KRSKLMLPPP
301: QISDHELEEI AKMGYASDLL AENEELTEGS AATRALLANY SQTPRQGMTP MRTPQRTPAG KGDAIMMEAE NLARLRDSQT PLLGGENPEL HPSDFTGVTP
401: RKKEIQTPNP MLTPSMTPGG AGLTPRIGLT PSRDGSSFSM TPKGTPFRDE LHINEDMDMH ESAKLERQRR EEARRSLRSG LTGLPQPKNE YQIVAQPPPE
501: ESEEPEEKIE EDMSDRIARE KAEEEARQQA LLKKRSKVLQ RDLPRPPAAS LAVIRNSLLS ADGDKSSVVP PTPIEVADKM VREELLQLLE HDNAKYPLDD
601: KAEKKKGAKN RTNRSASQVL AIDDFDENEL QEADKMIKEE GKFLCVSMGH ENKTLDDFVE AHNTCVNDLM YFPTRSAYEL SSVAGNADKV AAFQEEMENV
701: RKKMEEDEKK AEHMKAKYKT YTKGHERRAE TVWTQIEATL KQAEIGGTEV ECFKALKRQE EMAASFRKKN LQEEVIKQKE TESKLQTRYG NMLAMVEKAE
801: EIMVGFRAQA LKKQEDVEDS HKLKEAKLAT GEEEDIAIAM EASA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)