AT1G09730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1); Has 1713 Blast hits to 1567 proteins in 224 species: Archae - 4; Bacteria - 15; Metazoa - 815; Fungi - 324; Plants - 268; Viruses - 7; Other Eukaryotes - 280 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3148017..3154236 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109651.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.12 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||
| Length | 963 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKKNFEVFDF KEEDELAESA AGKLLEKFTN PSPCNSPVLQ RQRIQSFCNE KRVEEEEMEG PSCAEPATAV ESDDHQCEDD STLVTEAKES RTILTFGLET 101: TDHLEETDAE HVNQGLMLGL KTEDLAKETD IDHDNHGLMF GLNSEDDIEE TDVDHRVESF SCQLGGNSFY AETSSYSQRQ LNSPFSDSSS SEEQIDMMSA 201: IDESLSDRSA LSEASDSEDD EEGTCYTFSL YFLIDMLGSP MSDRVLISML YALKDWMTEH CFNDEEKIDL STAVIMTSEY VILKDMHCAA SLVIFSCNGI 301: KIKSFLANNE EVPFSCEFGV EDIVSIQYNW YQNVGLIILR IRVLLKDENC HEDMEELKIA VKEHNWPNKQ QKINSLHVKY PAVWNTDLED DVEVSGYNLN 401: QQKRYFPSFD EPFEDVVYPK GDPDAVSICK RDVELLQPET FVNDTIIDFY INYLKNQIQT EEKHRFHFFN SFFFRKLADL DKDPSSIADG KAAFLRVRKW 501: TRKVDMFGKD YIFVPVNYNL HWSLIVICHP GEVANRTDLD LDDSKKVPCI LHMDSIKGSH AGLKNLVQTY LCEEWKERHK ETSDDISSRF MNLRFVSLEL 601: PQQENSFDCG LFLLHYLELF LAEAPLNFSP FKIYNASNFL YLNWFPPAEA SLKRTLIQKL IFELLENRSR EVSNEQNQSC ESPVAVNDDM GIEVLSERCS 701: PLIDCNGDMT QTQDDQGIEM TLLERSSMRH IQAANDSGMV LRDLFDSGSN NTGSLLEQLQ QPFEDPSSFY HLSNDSSARE QVDMETGEQF MCLNAGEGNF 801: QCITETTSPR ASNSFSSWNL GIPLVQKEDE TDLLSETSNS SNDSIGIIED NPIENTHEEE IDESPPRETV SLKSATVGSN TADHTTENEE PVSTHIELVV 901: PSSQNDRDEE KPLEHDLEIG DKTSEDVGDD CDQKEPMEEE DEKRAAKRPR LSSPTGEAEE MEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)