suba logo
AT1G09730.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G33620.1); Has 1713 Blast hits to 1567 proteins in 224 species: Archae - 4; Bacteria - 15; Metazoa - 815; Fungi - 324; Plants - 268; Viruses - 7; Other Eukaryotes - 280 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5160eggNOG:KOG0779EMBL:CP002684EnsemblPlants:AT1G09730EnsemblPlants:AT1G09730.1entrez:837501ExpressionAtlas:F4I133
GeneID:837501GO:GO:0008234Gramene:AT1G09730.1hmmpanther:PTHR24365InterPro:IPR003653iPTMnet:F4I133OMA:GLMFGLN
PaxDb:F4I133Pfam:PF02902Pfscan:PS50600PRIDE:F4I133PROSITE:PS50600ProteinModelPortal:F4I133Proteomes:UP000006548
RefSeq:NP_172444.3SMR:F4I133STRING:3702.AT1G09730.1SUPFAM:SSF54001TAIR:AT1G09730UniGene:At.23076UniProt:F4I133
Coordinates (TAIR10) chr1:-:3148017..3154236
Molecular Weight (calculated) 109651.00 Da
IEP (calculated) 4.12
GRAVY (calculated) -0.60
Length 963 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKNFEVFDF KEEDELAESA AGKLLEKFTN PSPCNSPVLQ RQRIQSFCNE KRVEEEEMEG PSCAEPATAV ESDDHQCEDD STLVTEAKES RTILTFGLET
101: TDHLEETDAE HVNQGLMLGL KTEDLAKETD IDHDNHGLMF GLNSEDDIEE TDVDHRVESF SCQLGGNSFY AETSSYSQRQ LNSPFSDSSS SEEQIDMMSA
201: IDESLSDRSA LSEASDSEDD EEGTCYTFSL YFLIDMLGSP MSDRVLISML YALKDWMTEH CFNDEEKIDL STAVIMTSEY VILKDMHCAA SLVIFSCNGI
301: KIKSFLANNE EVPFSCEFGV EDIVSIQYNW YQNVGLIILR IRVLLKDENC HEDMEELKIA VKEHNWPNKQ QKINSLHVKY PAVWNTDLED DVEVSGYNLN
401: QQKRYFPSFD EPFEDVVYPK GDPDAVSICK RDVELLQPET FVNDTIIDFY INYLKNQIQT EEKHRFHFFN SFFFRKLADL DKDPSSIADG KAAFLRVRKW
501: TRKVDMFGKD YIFVPVNYNL HWSLIVICHP GEVANRTDLD LDDSKKVPCI LHMDSIKGSH AGLKNLVQTY LCEEWKERHK ETSDDISSRF MNLRFVSLEL
601: PQQENSFDCG LFLLHYLELF LAEAPLNFSP FKIYNASNFL YLNWFPPAEA SLKRTLIQKL IFELLENRSR EVSNEQNQSC ESPVAVNDDM GIEVLSERCS
701: PLIDCNGDMT QTQDDQGIEM TLLERSSMRH IQAANDSGMV LRDLFDSGSN NTGSLLEQLQ QPFEDPSSFY HLSNDSSARE QVDMETGEQF MCLNAGEGNF
801: QCITETTSPR ASNSFSSWNL GIPLVQKEDE TDLLSETSNS SNDSIGIIED NPIENTHEEE IDESPPRETV SLKSATVGSN TADHTTENEE PVSTHIELVV
901: PSSQNDRDEE KPLEHDLEIG DKTSEDVGDD CDQKEPMEEE DEKRAAKRPR LSSPTGEAEE MEK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)