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AT1G09700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : dsRNA-binding domain-like superfamily protein
Curator
Summary (TAIR10)
Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.
Computational
Description (TAIR10)
HYPONASTIC LEAVES 1 (HYL1); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1); Has 992 Blast hits to 893 proteins in 320 species: Archae - 14; Bacteria - 506; Metazoa - 117; Fungi - 6; Plants - 270; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink).
Protein Annotations
BioGrid:22739DIP:DIP-33453NeggNOG:ENOG410IWVAeggNOG:ENOG4111ZFGEMBL:AC000132EMBL:AF276440EMBL:AK319123
EMBL:AY054631EMBL:AY081525EMBL:CP002684EnsemblPlants:AT1G09700EnsemblPlants:AT1G09700.1entrez:837498EvolutionaryTrace:O04492
Gene3D:3.30.160.20GeneID:837498Genevisible:O04492GO:GO:0003725GO:GO:0004525GO:GO:0005634GO:GO:0009733
GO:GO:0009735GO:GO:0009737GO:GO:0010267GO:GO:0010305GO:GO:0010445GO:GO:0010589GO:GO:0031053
GO:GO:0031054GO:GO:0035196GO:GO:0035198GO:GO:0035279GO:GO:0090502hmmpanther:PTHR11207InParanoid:O04492
IntAct:O04492InterPro:IPR014720iPTMnet:O04492KEGG:ath:AT1G09700OMA:CMNGLKEPaxDb:O04492PDB:2L2M
PDB:2L2NPDB:3ADGPDB:3ADIPDB:3ADJPDBsum:2L2MPDBsum:2L2NPDBsum:3ADG
PDBsum:3ADIPDBsum:3ADJPfam:O04492Pfam:PF00035Pfscan:PS50137PIR:H86230PRIDE:O04492
PRO:PR:O04492PROSITE:PS50137ProteinModelPortal:O04492Proteomes:UP000006548RefSeq:NP_563850.1SMART:SM00358SMR:O04492
STRING:3702.AT1G09700.1SUPFAM:SSF54768TAIR:AT1G09700tair10-symbols:DRB1tair10-symbols:HYL1UniGene:At.10223UniProt:O04492
Coordinates (TAIR10) chr1:-:3137960..3140118
Molecular Weight (calculated) 45549.00 Da
IEP (calculated) 5.42
GRAVY (calculated) -0.50
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)