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AT1G09660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding KH domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26480.1); Has 1343 Blast hits to 1342 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 810; Fungi - 168; Plants - 277; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
BioGrid:22735eggNOG:COG5176eggNOG:KOG1588EMBL:AC000132EMBL:AF419590EMBL:AK118683EMBL:AK175370
EMBL:AK175796EMBL:AK176267EMBL:AK176765EMBL:AK176899EMBL:AY079111EMBL:BX842524EMBL:CP002684
EnsemblPlants:AT1G09660EnsemblPlants:AT1G09660.1entrez:837494Gene3D:3.30.1370.10GeneID:837494Genevisible:Q8GWR3GO:GO:0003723
GO:GO:0005634hmmpanther:PTHR11208hmmpanther:PTHR11208:SF48HOGENOM:HOG000238548InParanoid:Q8GWR3IntAct:Q8GWR3InterPro:IPR004087
InterPro:IPR004088InterPro:IPR032377KEGG:ath:AT1G09660KO:K14945OMA:MAPNHNFPaxDb:Q8GWR3Pfam:PF16544
Pfam:Q8GWR3PhylomeDB:Q8GWR3PIR:D86230PIR:E86230PRIDE:Q8GWR3PRO:PR:Q8GWR3ProteinModelPortal:Q8GWR3
Proteomes:UP000006548RefSeq:NP_172437.2RefSeq:NP_973800.1SMART:SM00322SMR:Q8GWR3STRING:3702.AT1G09660.1SUPFAM:SSF54791
TAIR:AT1G09660UniGene:At.10221UniProt:Q8GWR3
Coordinates (TAIR10) chr1:-:3128032..3130791
Molecular Weight (calculated) 33689.70 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.54
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MMESGAGFVA MEERISPGSF FQYPLSGFRA SPNRSPCPPS DRERYLTELL QERQKLGPFL QVMPNCCRLL NHEIRRVSSF PDLDRYEHGS PFRSLGQPTN
101: GKLDLEGWSM MQAEENCHLQ RASPFRGPSP VGWIGMPGLP NPPIVKKVIR LDVPVDKYPS YNFVGRILGP RGNSLKRVEL ATHCRVFIRG RGSVKDTVKE
201: EKLKGKPGYE HLCEPLHVLI EAELPEDIIN SRLEHAVHFL ESLLKPMDES MDHYKREQLK ELAALNGTLR EESPSPSLSP CLSPSMSPFN SKRAKTEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)