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AT1G09570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome A
Curator
Summary (TAIR10)
Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.
Computational
Description (TAIR10)
phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome C (TAIR:AT5G35840.1); Has 30353 Blast hits to 29854 proteins in 3804 species: Archae - 337; Bacteria - 24139; Metazoa - 4; Fungi - 596; Plants - 4116; Viruses - 7; Other Eukaryotes - 1154 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G09570-MONOMERBioCyc:ARA:GQT-1106-MONOMERBioGrid:22724DIP:DIP-33461N
eggNOG:COG4251eggNOG:ENOG410IHYDEMBL:AC003970EMBL:AY039520
EMBL:CP002684EMBL:L21154EMBL:X17341EnsemblPlants:AT1G09570
EnsemblPlants:AT1G09570.1entrez:837483ExpressionAtlas:P14712Gene3D:3.30.565.10
GeneID:837483Genevisible:P14712GO:GO:0000155GO:GO:0005634
GO:GO:0005737GO:GO:0006351GO:GO:0006355GO:GO:0009584
GO:GO:0009630GO:GO:0009638GO:GO:0009640GO:GO:0009883
GO:GO:0010018GO:GO:0010161GO:GO:0010201GO:GO:0010203
GO:GO:0016604GO:GO:0016607GO:GO:0017006GO:GO:0017148
GO:GO:0018298GO:GO:0031516GO:GO:0042802GO:GO:0046685
hmmpanther:PTHR24423hmmpanther:PTHR24423:SF519HOGENOM:HOG000272703InParanoid:P14712
IntAct:P14712InterPro:IPR000014InterPro:IPR001294InterPro:IPR003018
InterPro:IPR003594InterPro:IPR003661InterPro:IPR005467InterPro:IPR012129
InterPro:IPR013515InterPro:IPR013516InterPro:IPR013654InterPro:IPR013767
InterPro:IPR016132InterPro:IPR029016KEGG:ath:AT1G09570KO:K12120
MINT:MINT-1174780ncoils:CoilOMA:AYLHHIQPaxDb:P14712
Pfam:P14712Pfam:PF00360Pfam:PF00989Pfam:PF01590
Pfam:PF02518Pfam:PF08446Pfscan:PS50046Pfscan:PS50109
Pfscan:PS50112PhylomeDB:P14712PIR:A33473PIR:D86229
PIRSF:PIRSF000084PRIDE:P14712PRINTS:PR01033PRO:PR:P14712
PROSITE:PS00245PROSITE:PS50046PROSITE:PS50109PROSITE:PS50112
ProteinModelPortal:P14712Proteomes:UP000006548RefSeq:NP_001117256.1RefSeq:NP_172428.1
scanprosite:PS00245SMART:SM00065SMART:SM00091SMART:SM00387
SMART:SM00388SMR:P14712STRING:3702.AT1G09570.1SUPFAM:SSF55781
SUPFAM:SSF55785SUPFAM:SSF55874TAIR:AT1G09570tair10-symbols:FHY2
tair10-symbols:FRE1tair10-symbols:HY8tair10-symbols:PHYATIGRfam:TIGR00229
TIGRFAMs:TIGR00229UniGene:At.22828UniProt:P14712
Coordinates (TAIR10) chr1:-:3095498..3099216
Molecular Weight (calculated) 124508.00 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.14
Length 1122 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSGSRPTQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS
0101: ENASELLTMA SHAVPSVGEH PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC RTSAKPFYAI IHRVTGSIII DFEPVKPYEV PMTAAGALQS
0201: YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
0301: LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDATTQPQ KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK
0401: EVELDNQMVE KNILRTQTLL CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSEFHLQE IASWLCEYHM DSTGLSTDSL HDAGFPRALS
0501: LGDSVCGMAA VRISSKDMIF WFRSHTAGEV RWGGAKHDPD DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDS ETTDVNTKVI
0601: YSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLSVDEA IGKHFLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH
0701: LSRADAGPIS LVVNACASRD LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP AMSKLTGLKR EEVIDKMLLG
0801: EVFGTQKSCC RLKNQEAFVN LGIVLNNAVT SQDPEKVSFA FFTRGGKYVE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTAVKRLKAL
0901: AYIKRQIRNP LSGIMFTRKM IEGTELGPEQ RRILQTSALC QKQLSKILDD SDLESIIEGC LDLEMKEFTL NEVLTASTSQ VMMKSNGKSV RITNETGEEV
1001: MSDTLYGDSI RLQQVLADFM LMAVNFTPSG GQLTVSASLR KDQLGRSVHL ANLEIRLTHT GAGIPEFLLN QMFGTEEDVS EEGLSLMVSR KLVKLMNGDV
1101: QYLRQAGKSS FIITAELAAA NK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)