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AT1G09500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.845
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09510.1); Has 9627 Blast hits to 9614 proteins in 1666 species: Archae - 148; Bacteria - 3563; Metazoa - 355; Fungi - 930; Plants - 2402; Viruses - 50; Other Eukaryotes - 2179 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G09500-MONOMERBioCyc:ARA:GQT-914-MONOMERDNASU:837475eggNOG:COG0451
eggNOG:KOG1502EMBL:AC003970EMBL:AF424567EMBL:AF462838
EMBL:BT000479EMBL:CP002684EnsemblPlants:AT1G09500EnsemblPlants:AT1G09500.1
entrez:837475ExpressionAtlas:O80533Gene3D:3.40.50.720GeneID:837475
GO:GO:0004022GO:GO:0050662GO:GO:0055114Gramene:AT1G09500.1
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF362HOGENOM:HOG000167998IntAct:O80533
InterPro:IPR001509InterPro:IPR016040OMA:TCTKVSSPfam:PF01370
PhylomeDB:O80533PIR:E86228Proteomes:UP000006548RefSeq:NP_172421.1
SMR:O80533STRING:3702.AT1G09500.1SUPFAM:SSF51735TAIR:AT1G09500
UniGene:At.15730UniProt:O80533
Coordinates (TAIR10) chr1:+:3066811..3068484
Molecular Weight (calculated) 35775.20 Da
IEP (calculated) 5.47
GRAVY (calculated) 0.07
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGGKVVCV TGASGYIASW IVKLLLFRGY TINATVRDPK DRKKTDHLLA LDGAKERLKL FKADLLDEGS FELAIDGCET VFHTASPVAI TVKTDPQVEL
101: INPAVNGTIN VLRTCTKVSS VKRVILTSSM AAVLAPETKL GPNDVVDETF FTNPSFAEER KQWYVLSKTL AEDAAWRFAK DNEIDLIVLN PGLVTGPILQ
201: PTLNFSVAVI VELMKGKNPF NTTHHRFVDV RDVALAHVKA LETPSANGRY IIDGPVVTIK DIENVLREFF PDLCIADRNE DITELNSVTF NVCLDKVKSL
301: GIIEFTPTET SLRDTVLSLK EKCLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)