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AT1G09420.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glucose-6-phosphate dehydrogenase 4
Curator
Summary (TAIR10)
Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH. The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein. gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.
Computational
Description (TAIR10)
glucose-6-phosphate dehydrogenase 4 (G6PD4); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glucose metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1); Has 8248 Blast hits to 8228 proteins in 2347 species: Archae - 0; Bacteria - 5681; Metazoa - 875; Fungi - 180; Plants - 375; Viruses - 4; Other Eukaryotes - 1133 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G09420-MONOMERBioCyc:ARA:GQT-74-MONOMERBioGrid:22706BRENDA:1.1.1.49
EC:1.1.1.49eggNOG:COG0364eggNOG:KOG0563EMBL:AC003970
EMBL:AY056232EMBL:AY117271EMBL:CP002684EnsemblPlants:AT1G09420
EnsemblPlants:AT1G09420.1entrez:837465ExpressionAtlas:Q93ZW0Gene3D:3.40.50.720
GeneID:837465Genevisible:Q93ZW0GO:GO:0004345GO:GO:0006006
GO:GO:0006098GO:GO:0009507GO:GO:0050661HAMAP:MF_00966
hmmpanther:PTHR23429hmmpanther:PTHR23429:SF4HOGENOM:HOG000046192InParanoid:Q93ZW0
InterPro:IPR001282InterPro:IPR016040InterPro:IPR022674InterPro:IPR022675
iPTMnet:Q93ZW0KEGG:00030+1.1.1.49KEGG:00480+1.1.1.49PANTHER:PTHR23429
PaxDb:Q93ZW0Pfam:PF00479Pfam:PF02781Pfam:Q93ZW0
PhylomeDB:Q93ZW0PIR:E86227PRIDE:Q93ZW0PRINTS:PR00079
PRO:PR:Q93ZW0ProteinModelPortal:Q93ZW0Proteomes:UP000006548RefSeq:NP_563844.1
SMR:Q93ZW0STRING:3702.AT1G09420.2SUPFAM:SSF51735SUPFAM:SSF55347
TAIR:AT1G09420tair10-symbols:G6PD4TIGRfam:TIGR00871TIGRFAMs:TIGR00871
UniGene:At.26355UniPathway:UPA00115UniProt:Q0WPI4UniProt:Q93ZW0
Coordinates (TAIR10) chr1:-:3038640..3041715
Molecular Weight (calculated) 70206.40 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.31
Length 625 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSSCLLPF SQSATAPSSS VCSCHLAASF SNFPVSSRDY SFSRSGSLVL NGGGSNLCRR FCGLKLWILK SLNRRQGNNR KHQPVNELTT HSKHTFLSDD
101: ERGFAEETRA EDLRPEENIL GTDLNDGFHN VGDLPPVSKQ LSDDLSDVRR RASLCIAVVG ATGELARGKI FPALFALYYS GYLPEDVAIF GVSRKNLTDE
201: DLRSIIASTL TCRVDHQENC GGKMDAFQSR TYYINGGYNN RDGMSRLAER MKQIEGESEA NRIFYLSVPQ EALVDVACTI GDNAQAPRGW TRIIVEKPFG
301: FNSHSSHQLT KSLLSKFEEK QIYRIDHMLG RNLIENLTVL RFSNLVFEPL WNRTYIRNIQ VIISESIAQT EKFSDGYGII RDIVHSHILQ TIALLAMEPP
401: ISLDGEDIRN EKVKVLRSIR KIDPRDVILG QYKSSSRDKN GVILNGVDPT YCAAALYIDN ARWDGVPFLV RVGTGLIKHR VEIHVQFRHV PGNLYRENIG
501: INIDLGTNEL ILRDEPDEAI LVKINNKVPG LGLQLDASEL NLLYKDRYKT EVPDSYEHLI HDVIDGDNHL FMRSDEVAAA WNILSPVLEE IDKHHTAPEL
601: YEFGGRGPVA AYYLWAKHGV PWADD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)