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AT1G09340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22274653 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19288221 (2010): plastid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:17951448 (2007): peroxisome
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16461379 (2006): plastid plastid stroma plastoglobules
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast RNA binding
Curator
Summary (TAIR10)
Encodes CHLOROPLAST RNA BINDING (CRB), a putative RNA-binding protein. CRB is important for the proper functioning of the chloroplast. Mutations in CRB also affects the circadian system, altering the expression of both oscillator and output genes.
Computational
Description (TAIR10)
chloroplast RNA binding (CRB); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: in 6 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast stem-loop binding protein of 41 kDa (TAIR:AT3G63140.1); Has 5936 Blast hits to 5936 proteins in 1402 species: Archae - 366; Bacteria - 3891; Metazoa - 108; Fungi - 58; Plants - 234; Viruses - 3; Other Eukaryotes - 1276 (source: NCBI BLink).
Protein Annotations
BioGrid:22696eggNOG:ENOG410IKAZeggNOG:ENOG410XQQIEMBL:AC006416EMBL:AF325043EMBL:AF428282EMBL:AY035050
EMBL:AY062570EMBL:AY070022EMBL:AY087609EMBL:CP002684EMBL:Y10557EMBL:Y15382EnsemblPlants:AT1G09340
EnsemblPlants:AT1G09340.1entrez:837455Gene3D:3.40.50.720GeneID:837455Genevisible:Q9SA52GO:GO:0000272GO:GO:0003723
GO:GO:0003824GO:GO:0005773GO:GO:0005777GO:GO:0005840GO:GO:0005996GO:GO:0006364GO:GO:0007623
GO:GO:0009409GO:GO:0009506GO:GO:0009507GO:GO:0009570GO:GO:0009611GO:GO:0009658GO:GO:0009941
GO:GO:0010287GO:GO:0010297GO:GO:0010319GO:GO:0016020GO:GO:0019843GO:GO:0032544GO:GO:0042631
GO:GO:0042742GO:GO:0045727GO:GO:0045893GO:GO:0048046GO:GO:0050662Gramene:AT1G09340.1hmmpanther:PTHR10366
hmmpanther:PTHR10366:SF289HOGENOM:HOG000232785InParanoid:Q9SA52InterPro:IPR001509InterPro:IPR016040iPTMnet:Q9SA52KEGG:ath:AT1G09340
OMA:TSFRPTYPaxDb:Q9SA52Pfam:PF01370Pfam:Q9SA52PhylomeDB:Q9SA52PIR:E86226PIR:T51863
PIR:T52072PRIDE:Q9SA52PRO:PR:Q9SA52ProteinModelPortal:Q9SA52Proteomes:UP000006548RefSeq:NP_172405.1STRING:3702.AT1G09340.1
SUPFAM:SSF51735TAIR:AT1G09340tair10-symbols:CRBtair10-symbols:CSP41Btair10-symbols:HIP1.3UniGene:At.21708UniGene:At.50307
UniProt:Q9SA52
Coordinates (TAIR10) chr1:+:3015473..3018035
Molecular Weight (calculated) 42622.10 Da
IEP (calculated) 8.41
GRAVY (calculated) -0.36
Length 378 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKMMMLQQH QPSFSLLTSS LSDFNGAKLH LQVQYKRKVH QPKGALYVSA SSEKKILIMG GTRFIGLFLS RILVKEGHQV TLFTRGKSPI AKQLPGESDQ
101: DFADFSSKIL HLKGDRKDYD FVKSSLSAEG FDVVYDINGR EAEEVEPILE ALPKLEQYIY CSSAGVYLKS DILPHCEEDA VDPKSRHKGK LETESLLQSK
201: GVNWTSIRPV YIYGPLNYNP VEEWFFHRLK AGRPIPVPNS GIQISQLGHV KDLATAFLNV LGNEKASREI FNISGEKYVT FDGLAKACAK AGGFPEPEIV
301: HYNPKEFDFG KKKAFPFRDQ HFFASVEKAK HVLGWKPEFD LVEGLTDSYN LDFGRGTFRK EADFTTDDMI LSKKLVLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)