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AT1G09290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 73 Blast hits to 71 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 11; Plants - 54; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEEEeggNOG:ENOG4111P8YEMBL:AY035155EMBL:CP002684
EnsemblPlants:AT1G09290EnsemblPlants:AT1G09290.1entrez:837450GeneID:837450
Gramene:AT1G09290.1hmmpanther:PTHR13452hmmpanther:PTHR13452:SF9KEGG:ath:AT1G09290
OMA:TKPRLCIProteomes:UP000006548RefSeq:NP_172400.2SUPFAM:SSF143437
TAIR:AT1G09290UniGene:At.42232UniProt:Q7XBQ8
Coordinates (TAIR10) chr1:-:3001682..3003715
Molecular Weight (calculated) 38499.30 Da
IEP (calculated) 6.78
GRAVY (calculated) -0.36
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVEEVDDV GRTIEEETVC EKRERGEEAE TLTPWEQHSS IISIPRFDYK APSSLLHHSH SGFLVTCNIK REKSATKEVM SILGKYIGSM HEEKPEVLNS
101: TASKKQKVCA QETEEGGEKT VPLENDALQE TGENPNVEDL KLANEEHNSL MSLVKLTKSG LLLFTFPVEN SPNTTNIVSR VFQSMESGAL KAPIWCHRIF
201: PVQATCGLTE KELRETVSKL VQRFVNDKDN TLSKPVKFAA GYQRRGAEET KGKIRKDASD VLVQCPLLDR IKCFETVAAG VKDIVPDSVV DLKSPELCVL
301: VELLPLSRIS SGSFVAAVSV LPHRLVSTKP KLCIKPLVPE SKHKKGPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)