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AT1G09280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.955
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1); Has 5925 Blast hits to 5912 proteins in 1592 species: Archae - 0; Bacteria - 2946; Metazoa - 156; Fungi - 408; Plants - 229; Viruses - 0; Other Eukaryotes - 2186 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JYHeggNOG:KOG2551EMBL:AC003114EMBL:AY048288EMBL:BT030364EMBL:CP002684EnsemblPlants:AT1G09280
EnsemblPlants:AT1G09280.1entrez:837449ESTHER:arath-At1g09280Gene3D:3.40.250.10Gene3D:3.40.50.1820GeneID:837449Genevisible:Q94AC1
Gramene:AT1G09280.1hmmpanther:PTHR22778hmmpanther:PTHR22778:SF0HOGENOM:HOG000030844InParanoid:Q94AC1InterPro:IPR001763InterPro:IPR005645
InterPro:IPR022111InterPro:IPR029058iPTMnet:Q94AC1KEGG:ath:AT1G09280OMA:HCRMLVLPaxDb:Q94AC1Pfam:PF03959
Pfam:PF12368Pfam:Q94AC1Pfscan:PS50206PhylomeDB:Q94AC1PIR:G86225PRIDE:Q94AC1PRO:PR:Q94AC1
PROSITE:PS50206ProteinModelPortal:Q94AC1Proteomes:UP000006548RefSeq:NP_563840.1SMART:SM00450SMR:Q94AC1STRING:3702.AT1G09280.1
SUPFAM:SSF52821SUPFAM:SSF53474TAIR:AT1G09280UniGene:At.48171UniGene:At.66826UniProt:Q94AC1
Coordinates (TAIR10) chr1:-:2998209..3001253
Molecular Weight (calculated) 64737.20 Da
IEP (calculated) 6.50
GRAVY (calculated) -0.29
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTSSCGDHE KQRIEDEEQY GVLLYYKYTS VPDLDELVSF YESSCNSLGL LGRVRLSPKG VNVTVGGKLT ALEEHIAAAK SNCLFEGTDF KLASCHHPLN
101: DKVAEECGFT SLSIRVVEEL VTFSPCPPLK PPEISNAGKH LSAAEFHSVL QSANGKSENK ELVLLDARNL YETRIGKFES ENVETLDPEI RQYSDLPTWI
201: DQNAEKMKGK NVLMYCTGGI RCEMASAYIR SKGAGFENTF QLYGGIQRYL EQFPSGGFFK GKNFVFDHRI SVGSSKEDII GSCLLCNNTF DDYSPRCRCR
301: LCRMLVLVCN HCRVKGDIYI CELCRKHGKG EVPLSLDPLN QPSESNGDNT RRKLRILCLH GFRQNASSFK GRTGSLAKKL KNIAELVFID APHELQFIYQ
401: TATPPSGVCN KKFAWLVSSD FDKPSETGWT VAQCQFDPLQ YQTQTEGFDK SLTYLKTAFE EKGPFDGILG FSQGAAMAAA VCGKQEQLVG EIDFRFCVLC
501: SGFTPWPLLE MKEKRSIKCP SLHIFGSQPG KDRQIVTQAS SDLAGLFEDG CATIVEHDFG HIIPTKSPYI DEIKAFLYQF I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)