AT1G09220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 31696 Blast hits to 12551 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 19; Plants - 31380; Viruses - 0; Other Eukaryotes - 282 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2977952..2979466 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57137.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.63 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 504 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLFSSRRIT SLRSYTIIKH SSCYSTLVSD GNIFSIQHFQ SLMQKYESNL KIIHQLHSHF TTSGFLLLHQ KQNSGKLFLF NPLLRCYSLG ETPLHAYFLY 101: DQLQRLHFLS DHNKSLPPFD SFTYLFLLKA SSNPRFPSLL LGIGLHGLTL KLGFESHVYV QTALVGMYLV GGNMIDAHKV FDEMPERNPV TWNVMITGLT 201: NLGDFEKALC FLEKMPNRTV VSWTTIIDGY ARVDKPKEAI LLFSRMVACD AIKPNEITIL AILPAVWNLG DLKMCGSVHA YVGKRGFVPC DIRVTNSLID 301: AYAKCGCIQS AFKFFIEIPN GRKNLVSWTT MISAFAIHGM GKEAVSMFKD MERLGLKPNR VTMISVLNAC SHGGLAEEEF LEFFNTMVNE YKITPDVKHY 401: GCLVDMLRRK GRLEEAEKIA LEIPIEEKAV VWRMLLGACS VYDDAELAER VTRKLMELER SHGGDYVLMS NIFCGTGRFL DAQRFRKQMD VRGVAKLPGH 501: SQVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)