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AT1G09210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : mitochondrion 12492832
AmiGO : mitochondrion 14671022
AmiGO : vacuole 15539469
SwissProt : endoplasmic reticulum 16381842
TAIR : vacuole 15539469
TAIR : endoplasmic reticulum 16618929
TAIR : mitochondrion 12492832
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18931141 (2008): endoplasmic reticulum
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24393051 (2015): endoplasmic reticulum
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22540835 (2012): mitochondrion
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
FP Images

onion epidermal cell layer (peroxisomal marker)

At1g-GFP-09210
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calreticulin 1b
Curator
Summary (TAIR10)
Encodes one of three Arabidopsis calreticulins.
Computational
Description (TAIR10)
calreticulin 1b (CRT1b); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to salt stress; LOCATED IN: mitochondrion, endoplasmic reticulum, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1a (TAIR:AT1G56340.1); Has 5507 Blast hits to 3456 proteins in 438 species: Archae - 6; Bacteria - 291; Metazoa - 2217; Fungi - 528; Plants - 416; Viruses - 176; Other Eukaryotes - 1873 (source: NCBI BLink).
Protein Annotations
BioGrid:22682eggNOG:ENOG410XRR7eggNOG:KOG0674EMBL:AC003114
EMBL:AY045656EMBL:AY059662EMBL:CP002684EMBL:U27698
EMBL:U66344EnsemblPlants:AT1G09210EnsemblPlants:AT1G09210.1entrez:837441
Gene3D:2.10.250.10Gene3D:2.60.120.200GeneID:837441Genevisible:Q38858
GO:GO:0005509GO:GO:0005739GO:GO:0005773GO:GO:0005783
GO:GO:0005788GO:GO:0006457GO:GO:0006979GO:GO:0009651
GO:GO:0030246GO:GO:0048046Gramene:AT1G09210.1hmmpanther:PTHR11073
HOGENOM:HOG000192435InParanoid:Q38858InterPro:IPR001580InterPro:IPR009033
InterPro:IPR009169InterPro:IPR013320InterPro:IPR018124iPTMnet:Q38858
KEGG:ath:AT1G09210KO:K08057ncoils:CoilOMA:AEPTVYF
PANTHER:PTHR11073PaxDb:Q38858Pfam:PF00262Pfam:Q38858
PhylomeDB:Q38858PIR:H86224PIRSF:PIRSF002356PRIDE:Q38858
PRINTS:PR00626PRO:PR:Q38858PROSITE:PS00014PROSITE:PS00803
PROSITE:PS00804PROSITE:PS00805ProteinModelPortal:Q38858Proteomes:UP000006548
Reactome:R-ATH-901042RefSeq:NP_172392.1scanprosite:PS00803scanprosite:PS00804
scanprosite:PS00805SMR:Q38858STRING:3702.AT1G09210.1SUPFAM:SSF49899
SUPFAM:SSF63887SWISS-2DPAGE:Q38858TAIR:AT1G09210tair10-symbols:AtCRT1b
tair10-symbols:CRT1bTMHMM:TMhelixUniGene:At.1529UniProt:Q38858
Coordinates (TAIR10) chr1:-:2973217..2976655
Molecular Weight (calculated) 48159.00 Da
IEP (calculated) 4.13
GRAVY (calculated) -0.96
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKMIPSLVS LILIGLVAIA SAAVIFEERF DDGWENRWVK SEWKKDDNTA GEWKHTAGNW SGDANDKGIQ TSEDYRFYAI SAEFPEFSNK DKTLVFQFSV
101: KHEQKLDCGG GYMKLLSGDV DQKKFGGDTP YSIMFGPDIC GYSTKKVHAI LTYNEANHLI KKDVPCETDQ LTHVYTFILR PDATYSILID NVEKQTGSLY
201: SDWDLLPPKK IKDPSAKKPE DWDEQEYISD PEDKKPDGYD DIPKEIPDTD SKKPEDWDDE EDGEWTAPTI PNPEYMGEWK PKQIKNPNYK GKWEAPLIDN
301: PDFKDDPELY VFPKLKYVGL ELWQVKSGSL FDNVLICDDP DYAKKLADET WGKLKDAEKA AFDEAEKKNE EEESKDAPAE SDAEDEPEDD EGGDDSDSES
401: KAEETKSVDS EETSEKDATA HDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)