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AT1G09170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.959
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: shoot, male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 4 (TAIR:AT5G27000.1); Has 11983 Blast hits to 11146 proteins in 466 species: Archae - 0; Bacteria - 101; Metazoa - 5767; Fungi - 1479; Plants - 1905; Viruses - 0; Other Eukaryotes - 2731 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0239EMBL:CP002684EnsemblPlants:AT1G09170EnsemblPlants:AT1G09170.1entrez:837437Gene3D:1.10.418.10
Gene3D:3.40.850.10GeneID:837437GO:GO:0003777GO:GO:0005524GO:GO:0005874GO:GO:0007018Gramene:AT1G09170.1
hmmpanther:PTHR24115hmmpanther:PTHR24115:SF457InParanoid:F4HZF0InterPro:IPR001715InterPro:IPR001752InterPro:IPR019821InterPro:IPR027417
InterPro:IPR027640iPTMnet:F4HZF0KEGG:ath:AT1G09170KO:K10406ncoils:CoilOMA:PYEEEANPANTHER:PTHR24115
PaxDb:F4HZF0Pfam:PF00225Pfam:PF00307Pfscan:PS50021Pfscan:PS50067PRIDE:F4HZF0PRINTS:PR00380
PROSITE:PS00411PROSITE:PS50021PROSITE:PS50067ProteinModelPortal:F4HZF0Proteomes:UP000006548RefSeq:NP_172389.2scanprosite:PS00411
SMART:SM00033SMART:SM00129SMR:F4HZF0STRING:3702.AT1G09170.1SUPFAM:SSF47576SUPFAM:SSF52540TAIR:AT1G09170
UniGene:At.51531UniProt:F4HZF0
Coordinates (TAIR10) chr1:-:2956589..2962207
Molecular Weight (calculated) 111375.00 Da
IEP (calculated) 6.49
GRAVY (calculated) -0.57
Length 1010 amino acids
Sequence (TAIR10)
(BLAST)
0001: MATEQQDSQL CLATILEDFL KQRNIQVSVG VDSSSLKKAD ETFGGRDLPV DPSDLRRYEA ARWVRNTLGV VGGRDLPADP SEEDFRIALR SGILLCNVLN
0101: RVKPGAVPKV VEAPNDPLVN QDGAALSAFQ YFENLRNFLV FVEEMGIPTF EVSDFEKGGK SARIVECVLA LKSYREWKQS GGSGTWRYIL NSKPTTFGIA
0201: KQYKRKDSEV PVDAVTNSPS STPSSEQPLL DQSDSNTKND GTASSIDAIV RAVFSDMKQE DIPVIVEDML KSVMVEYERR LATQNELLLM SAGNRDKLGS
0301: GDLGRTISGN EETLSDASYG EENVTEIVNN NMEASQDSNV EELENQDYEL YAISKEKTEK QQLIIERQQT HTEELKHDLK AVKAGLSLLQ MKYQQEFTSL
0401: GKHLHGLTYA ATGYQRVLEE NRKLYNQVQD LKGSIRVYCR VRPFLPGQKS VLTTVDHLED STLSIATPSK YGKEGQKTFT FNKVFGPSAS QEAVFADTQP
0501: LIRSVLDGYN VCIFAYGQTG SGKTFTMMGP NELTDETLGV NYRALSDLFH LSKIRNSTQD GINVPEATLV PVSTTSDVIH LMNIGQKNRA VSATAMNDRS
0601: SRSHSCLTVH VQGKDLTSGV TLRGSMHLVD LAGSERIDKS EVTGDRLKEA QHINKSLSAL GDVIASLSQK NNHIPYRNSK LTQLLQDALG GQAKTLMFIH
0701: ISPELEDLGE TLSTLKFAER VATVDLGAAR VNKDTSEVKE LKEQIASLKL ALARKESGAD QTQLQRPLTP DKLLRKKSLG VSSSFSKSAN STRQVQTKHK
0801: PSQIDDVNSI EGQSDSASSL DLQGLVGSPS WKTPPRDGKE EDMEFIIPGS EWVDKHEDEI TRSSKPENRA HTQLEKRTSS LKREATRGVD KNKCNSSVDK
0901: GLEVRKIPYE EEANESDETA TSDCSETNLM WQLNVQVNMP RPASNGSSTK LKKNQSKISR VAAETRSMIP SLIPTPTRTL SLGAAISSPG QTSSRHNNST
1001: VVVKKRQNPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)