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AT1G09140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SERINE-ARGININE PROTEIN 30
Curator
Summary (TAIR10)
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.
Computational
Description (TAIR10)
SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0; Bacteria - 274; Metazoa - 6368; Fungi - 1180; Plants - 1529; Viruses - 86; Other Eukaryotes - 1110 (source: NCBI BLink).
Protein Annotations
BioGrid:22674eggNOG:COG0724eggNOG:KOG0105EMBL:AC003114EMBL:AJ131214EMBL:AY050912EMBL:AY150486
EMBL:CP002684EnsemblPlants:AT1G09140EnsemblPlants:AT1G09140.1EnsemblPlants:AT1G09140.2entrez:837433ExpressionAtlas:Q9XFR5Gene3D:3.30.70.330
GeneID:837433Genevisible:Q9XFR5GO:GO:0000166GO:GO:0003729GO:GO:0005681GO:GO:0005737GO:GO:0006376
GO:GO:0016607GO:GO:0035061GO:GO:0048024hmmpanther:PTHR24012hmmpanther:PTHR24012:SF442HOGENOM:HOG000276234InParanoid:Q9XFR5
IntAct:Q9XFR5InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9XFR5KEGG:ath:AT1G09140KO:K12890OMA:RWNRTIY
PaxDb:Q9XFR5Pfam:PF00076Pfam:Q9XFR5Pfscan:PS50102PhylomeDB:Q9XFR5PRIDE:Q9XFR5PRO:PR:Q9XFR5
PROSITE:PS50102ProteinModelPortal:Q9XFR5Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187RefSeq:NP_172386.3
RefSeq:NP_683288.2SMART:SM00360SMR:Q9XFR5STRING:3702.AT1G09140.1SUPFAM:SSF54928TAIR:AT1G09140tair10-symbols:At-SR30
tair10-symbols:ATSRP30tair10-symbols:SR30UniGene:At.419UniProt:Q9XFR5
Coordinates (TAIR10) chr1:-:2942887..2945818
Molecular Weight (calculated) 30387.30 Da
IEP (calculated) 10.22
GRAVY (calculated) -0.87
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRWNRTIY VGNLPGDIRK CEVEDLFYKY GPIVDIDLKI PPRPPGYAFV EFEDPRDADD AIYGRDGYDF DGCRLRVEIA HGGRRFSPSV DRYSSSYSAS
101: RAPSRRSDYR VLVTGLPPSA SWQDLKDHMR KAGDVCFSEV FPDRKGMSGV VDYSNYDDMK YAIRKLDATE FRNAFSSAYI RVREYESRSV SRSPDDSKSY
201: RSRSRSRGPS CSYSSKSRSV SPARSISPRS RPLSRSRSLY SSVSRSQSRS KSRSRSRSNS PVSPVISG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)