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AT1G09090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.794
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : respiratory burst oxidase homolog B
Curator
Summary (TAIR10)
NADPH-oxidase AtrbohB plays a role in seed after-ripening. Major producer of superoxide in germinating seeds. AtrbohB pre-mRNA is alternatively spliced in seeds in a hormonally and developmentally regulated manner. ABA caused accumulation of AtrbohB-ß mRNA and prevented prevented AtrbohB-a mRNA expression in fresh seeds.
Computational
Description (TAIR10)
respiratory burst oxidase homolog B (RBOHB); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: response to heat, seed germination, defense response; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: embryo, root; EXPRESSED DURING: imbibition; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: respiratory burst oxidase homologue D (TAIR:AT5G47910.1); Has 1619 Blast hits to 1551 proteins in 238 species: Archae - 2; Bacteria - 81; Metazoa - 636; Fungi - 280; Plants - 489; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZYeggNOG:KOG0039EMBL:CP002684EnsemblPlants:AT1G09090EnsemblPlants:AT1G09090.1entrez:837430ExpressionAtlas:F4HZD8
Gene3D:1.10.238.10GeneID:837430GO:GO:0004601GO:GO:0005509GO:GO:0016021GO:GO:0016174Gramene:AT1G09090.1
hmmpanther:PTHR11972hmmpanther:PTHR11972:SF57InterPro:IPR000778InterPro:IPR002048InterPro:IPR011992InterPro:IPR013112InterPro:IPR013130
InterPro:IPR013623InterPro:IPR017927InterPro:IPR017938InterPro:IPR029654KEGG:ath:AT1G09090PANTHER:PTHR11972:SF57PaxDb:F4HZD8
Pfam:PF01794Pfam:PF08022Pfam:PF08414Pfscan:PS50222Pfscan:PS51384PRIDE:F4HZD8PRINTS:PR00466
PROSITE:PS50222PROSITE:PS51384ProteinModelPortal:F4HZD8Proteomes:UP000006548RefSeq:NP_172383.3SMR:F4HZD8STRING:3702.AT1G09090.2
SUPFAM:SSF47473SUPFAM:SSF63380TAIR:AT1G09090tair10-symbols:ATRBOHBtair10-symbols:ATRBOHB-BETAtair10-symbols:RBOHBTMHMM:TMhelix
UniGene:At.10379UniGene:At.42241UniProt:F4HZD8
Coordinates (TAIR10) chr1:+:2932743..2935590
Molecular Weight (calculated) 71336.60 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.11
Length 622 amino acids
Sequence (TAIR10)
(BLAST)
001: MREEEMESSS EGETNKISRC KATGSDNPDE DYVEITLEVR DETINTMKAK ATLRSVLSGR LKTMVKSLSF ASRRLDRSKS FGAMFALRGL RFIAKNDAVG
101: RGWDEVAMRF DKLAVEGKLP KSKFGHCIGM VESSEFVNEL FEALVRRRGT TSSSITKTEL FEFWEQITGN SFDDRLQIFF DMVDKNLDGR ITGDEVKEII
201: ALSASANKLS KIKENVDEYA ALIMEELDRD NLGYIELHNL ETLLLQVPSQ SNNSPSSANK RALNKMLSQK LIPTKDRNPV KRFAMNISYF FLENWKRIWV
301: LTLWISICIT LFTWKFLQYK RKTVFEVMGY CVTVAKGSAE TLKFNMALIL LPVCRNTITW LRTKSKLIGS VVPFDDNINF HKVVAFGIAV GIGLHAISHL
401: ACDFPRLLHA KNVEFEPMKK FFGDERPENY GWFMKGTDGW TGVTMVVLML VAYVLAQSWF RRNRANLPKS LKRLTGFNAF WYSHHLFVIV YVLLIVHGYF
501: VYLSKEWYHK TTWMYLAVPV LLYAFERLIR AFRPGAKAVK VLKVAVYPGN VLSLYMSKPK GFKYTSGQYI YINCSDVSPL QWHPFSITSA SGDDYLSVHI
601: RTLGDWTSQL KSLYSKVTIF QE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)