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AT1G09070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.500
vacuole 0.500
ASURE: endoplasmic reticulum,vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16723734 (2006): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : soybean gene regulated by cold-2
Curator
Summary (TAIR10)
SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting.
Computational
Description (TAIR10)
soybean gene regulated by cold-2 (SRC2); CONTAINS InterPro DOMAIN/s: C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G16510.1); Has 25146 Blast hits to 15856 proteins in 1076 species: Archae - 6; Bacteria - 3010; Metazoa - 13770; Fungi - 3151; Plants - 2962; Viruses - 83; Other Eukaryotes - 2164 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZHBeggNOG:ENOG410YJ7VEMBL:AC000106EMBL:AJ007586EMBL:AY045580EMBL:AY142027EMBL:CP002684
EnsemblPlants:AT1G09070EnsemblPlants:AT1G09070.1entrez:837428Gene3D:2.60.40.150GeneID:837428Genevisible:O04023GO:GO:0000326
GO:GO:0005783GO:GO:0005789GO:GO:0005886GO:GO:0006623GO:GO:0016021GO:GO:0032586Gramene:AT1G09070.1
hmmpanther:PTHR32246hmmpanther:PTHR32246:SF18HOGENOM:HOG000238638InParanoid:O04023InterPro:IPR000008KEGG:ath:AT1G09070OMA:GDARTKQ
PaxDb:O04023Pfam:PF00168PhylomeDB:O04023PIR:G86222PIR:T51602PRIDE:O04023ProteinModelPortal:O04023
Proteomes:UP000006548RefSeq:NP_563835.1SMART:SM00239SMR:O04023STRING:3702.AT1G09070.1SUPFAM:SSF49562TAIR:AT1G09070
tair10-symbols:(AT)SRC2tair10-symbols:SRC2UniGene:At.24245UniGene:At.31705UniGene:At.5402UniGene:At.71449UniGene:At.74046
UniProt:O04023
Coordinates (TAIR10) chr1:+:2927767..2928741
Molecular Weight (calculated) 34191.30 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.70
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MECRSLDLTI ISAEDLKDVQ LIGKQDLYAV VSINGDARTK QKTKVDKDCG TKPKWKHQMK LTVDDAAARD NRLTLVFEIV ADRPIAGDKP VGEVSVPVKE
101: LLDQNKGDEE KTVTYAVRLP NGKAKGSLKF SFKFGEKYTY GSSSGPHAPV PSAMDHKTMD QPVTAYPPGH GAPSAYPAPP AGPSSGYPPQ GHDDKHDGVY
201: GYPQQAGYPA GTGGYPPPGA YPQQGGYPGY PPQQQGGYPG YPPQGPYGYP QQGYPPQGPY GYPQQQAHGK PQKPKKHGKA GAGMGLGLGL GAGLLGGLLV
301: GEAVSDIADM GDMGDMGDMG GFDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)