AT1G09060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129), WRC (InterPro:IPR014977), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT4G00990.1); Has 1115 Blast hits to 1061 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 398; Fungi - 30; Plants - 639; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2921235..2925212 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105597.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||
| Length | 930 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNANEQTRSA NGIGNGNGES IPGIPDDLRC KRSDGKQWRC TAMSMADKTV CEKHYIQAKK RAANSAFRAN QKKAKRRSSL GETDTYSEGK MDDFELPVTS 101: IDHYNNGLAS ASKSNGRLEK RHNKSLMRYS PETPMMRSFS PRVAVDLNDD LGRDVVMFEE GYRSYRTPPS VAVMDPTRNR SHQSTSPMEY SAASTDVSAE 201: SLGEICHQCQ RKDRERIISC LKCNQRAFCH NCLSARYSEI SLEEVEKVCP ACRGLCDCKS CLRSDNTIKV RIREIPVLDK LQYLYRLLSA VLPVIKQIHL 301: EQCMEVELEK RLREVEIDLV RARLKADEQM CCNVCRIPVV DYYRHCPNCS YDLCLRCCQD LREESSVTIS GTNQNVQDRK GAPKLKLNFS YKFPEWEANG 401: DGSIPCPPKE YGGCGSHSLN LARIFKMNWV AKLVKNAEEI VSGCKLSDLL NPDMCDSRFC KFAEREESGD NYVYSPSLET IKTDGVAKFE QQWAEGRLVT 501: VKMVLDDSSC SRWDPETIWR DIDELSDEKL REHDPFLKAI NCLDGLEVDV RLGEFTRAYK DGKNQETGLP LLWKLKDWPS PSASEEFIFY QRPEFIRSFP 601: FLEYIHPRLG LLNVAAKLPH YSLQNDSGPK IYVSCGTYQE ISAGDSLTGI HYNMRDMVYL LVHTSEETTF ERVRKTKPVP EEPDQKMSEN ESLLSPEQKL 701: RDGELHDLSL GEASMEKNEP ELALTVNPEN LTENGDNMES SCTSSCAGGA QWDVFRRQDV PKLSGYLQRT FQKPDNIQTD FVSRPLYEGL FLNEHHKRQL 801: RDEFGVEPWT FEQHRGEAIF IPAGCPFQIT NLQSNIQVAL DFLCPESVGE SARLAEEIRC LPNDHEAKLQ ILEIGKISLY AASSAIKEVQ KLVLDPKFGA 901: ELGFEDSNLT KAVSHNLDEA TKRPQQNSCT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)