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AT1G09030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : nuclear factor Y, subunit B4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit B4 (NF-YB4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B5 (TAIR:AT2G47810.1); Has 1487 Blast hits to 1487 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 373; Plants - 505; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
BioGrid:22665eggNOG:COG2036eggNOG:KOG0869EMBL:AC000106
EMBL:BT029363EMBL:CP002684EnsemblPlants:AT1G09030EnsemblPlants:AT1G09030.1
entrez:837424Gene3D:1.10.20.10GeneID:837424Genevisible:O04027
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0043565Gramene:AT1G09030.1hmmpanther:PTHR11064hmmpanther:PTHR11064:SF44
HOGENOM:HOG000211832InParanoid:O04027IntAct:O04027InterPro:IPR003956
InterPro:IPR003958InterPro:IPR009072KEGG:ath:AT1G09030OMA:CHRENRK
PaxDb:O04027Pfam:O04027Pfam:PF00808PhylomeDB:O04027
PIR:C86222PRIDE:O04027PRO:PR:O04027PROSITE:PS00685
ProteinModelPortal:O04027Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_172377.1
scanprosite:PS00685SMR:O04027STRING:3702.AT1G09030.1SUPFAM:SSF47113
TAIR:AT1G09030tair10-symbols:NF-YB4UniGene:At.64828UniProt:C0SUU0
UniProt:O04027
Coordinates (TAIR10) chr1:-:2908611..2909030
Molecular Weight (calculated) 15742.30 Da
IEP (calculated) 7.51
GRAVY (calculated) -0.96
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MTDEDRLLPI ANVGRLMKQI LPSNAKISKE AKQTVQECAT EFISFVTCEA SEKCHRENRK TVNGDDIWWA LSTLGLDNYA DAVGRHLHKY REAERERTEH
101: NKGSNDSGNE KETNTRSDVQ NQSTKFIRVV EKGSSSSAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)