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AT1G08980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : amidase 1
Curator
Summary (TAIR10)
Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. It appears to exist as a monomer.
Computational
Description (TAIR10)
amidase 1 (AMI1); FUNCTIONS IN: amidase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, indoleacetamide hydrolase activity; INVOLVED IN: indoleacetic acid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidase, conserved site (InterPro:IPR020556), Amidase (InterPro:IPR000120); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-V (TAIR:AT5G09420.1); Has 18462 Blast hits to 18443 proteins in 2488 species: Archae - 262; Bacteria - 10888; Metazoa - 543; Fungi - 1390; Plants - 376; Viruses - 0; Other Eukaryotes - 5003 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G08980-MONOMEREC:3.5.1.4eggNOG:COG0154eggNOG:KOG1211EMBL:AC000106EMBL:AF202077EMBL:AY037198
EMBL:BT004554EMBL:CP002684EnsemblPlants:AT1G08980EnsemblPlants:AT1G08980.1entrez:837418Gene3D:3.90.1300.10GeneID:837418
Genevisible:Q9FR37GO:GO:0004040GO:GO:0005737GO:GO:0005829GO:GO:0009684GO:GO:0016810GO:GO:0016884
GO:GO:0043864Gramene:AT1G08980.1gramene_pathway:3.5.1.4gramene_pathway:P345-PWYgramene_pathway:PWY-581gramene_plant_reactome:1119388gramene_plant_reactome:6874842
hmmpanther:PTHR11895hmmpanther:PTHR11895:SF39HOGENOM:HOG000116697InParanoid:Q9FR37InterPro:IPR000120InterPro:IPR020556InterPro:IPR023631
KEGG:00970+6.3.5.7KEGG:ath:AT1G08980OMA:PRCDADEPANTHER:PTHR11895PaxDb:Q9FR37Pfam:PF01425Pfam:Q9FR37
PhylomeDB:Q9FR37PIR:F86221PRIDE:Q9FR37PRO:PR:Q9FR37PROSITE:PS00571ProteinModelPortal:Q9FR37Proteomes:UP000006548
RefSeq:NP_563831.1scanprosite:PS00571SMR:Q9FR37STRING:3702.AT1G08980.1SUPFAM:SSF75304TAIR:AT1G08980tair10-symbols:AMI1
tair10-symbols:ATAMI1tair10-symbols:ATTOC64-Itair10-symbols:TOC64-IUniGene:At.21299UniProt:Q9FR37
Coordinates (TAIR10) chr1:+:2884455..2886430
Molecular Weight (calculated) 45058.90 Da
IEP (calculated) 6.23
GRAVY (calculated) 0.16
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MATNNDFGAF IEKVTISPTS TSSSPPSLQG LTFAIKDIFD VEGRVTGFGN PDWLRTHSAA TSTAPVVSSL LEAGATALGI TIMDEMAYSI NGENAHYGTP
101: RNPIAFDRVP GGSSSGSAVA VAARLVDFSI GTDTGGSVRV PASYCGIFGF RPSHGAVSTV GLTPMAQSFD TVGWFARDTA TLKRVGCVLL QQHHLNPIEP
201: SQLIIADDCF KLCSVPHDLL VQPLVGSVEK SFGGNTVVKK VNLGEYIGQN VPSLKHFMTS DDVTTQQEFC IPSLMALSSS MRLLQRHEFK INHGAWISSV
301: KPEFGPGISE RIEEAIRTSD EKIDHCRSVK SELITALSTL LGEKGVLVIP TVPGPPPHLQ ANVAALESFR SRAFSLLSIA GVSGFCQVSI PLGLHENLPV
401: SVSLVAKYGS DGFLLSLVDS LAAFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)