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AT1G08970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit C9
Curator
Summary (TAIR10)
heme activated protein (HAP5c)
Computational
Description (TAIR10)
nuclear factor Y, subunit C9 (NF-YC9); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 349; Plants - 427; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5208eggNOG:KOG1657EMBL:AK316882EnsemblPlants:AT1G08970
EnsemblPlants:AT1G08970.1EnsemblPlants:AT1G08970.2EnsemblPlants:AT1G08970.3EnsemblPlants:AT1G08970.4
entrez:837417ExpressionAtlas:B9DFS3Gene3D:1.10.20.10GeneID:837417
GO:GO:0005634Gramene:AT1G08970.1Gramene:AT1G08970.2Gramene:AT1G08970.3
Gramene:AT1G08970.4hmmpanther:PTHR10252hmmpanther:PTHR10252:SF48InterPro:IPR003958
InterPro:IPR009072KEGG:ath:AT1G08970OMA:QAFWENQPaxDb:B9DFS3
Pfam:PF00808Pfam:Q8L4B2PhylomeDB:B9DFS3PRIDE:B9DFS3
ProteinModelPortal:B9DFS3RefSeq:NP_172371.1RefSeq:NP_849619.1RefSeq:NP_973796.1
RefSeq:NP_973797.1SMR:B9DFS3STRING:3702.AT1G08970.1SUPFAM:SSF47113
TAIR:AT1G08970tair10-symbols:HAP5Ctair10-symbols:NF-YC9UniGene:At.22258
UniProt:B9DFS3UniProt:Q8L4B2
Coordinates (TAIR10) chr1:+:2883144..2883839
Molecular Weight (calculated) 25641.20 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.63
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQQDHGQSG AMNYGTNPYQ TNPMSTTAAT VAGGAAQPGQ LAFHQIHQQQ QQQQLAQQLQ AFWENQFKEI EKTTDFKNHS LPLARIKKIM KADEDVRMIS
101: AEAPVVFARA CEMFILELTL RSWNHTEENK RRTLQKNDIA AAVTRTDIFD FLVDIVPRED LRDEVLGSIP RGTVPEAAAA GYPYGYLPAG TAPIGNPGMV
201: MGNPGGAYPP NPYMGQPMWQ QQAPDQPDQE N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)