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AT1G08810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 60
Curator
Summary (TAIR10)
putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought.
Computational
Description (TAIR10)
myb domain protein 60 (MYB60); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 8826 Blast hits to 8217 proteins in 521 species: Archae - 0; Bacteria - 0; Metazoa - 784; Fungi - 468; Plants - 5803; Viruses - 7; Other Eukaryotes - 1764 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AK117469EMBL:AY519551EMBL:BT005074EMBL:CP002684EnsemblPlants:AT1G08810
EnsemblPlants:AT1G08810.1entrez:837403ExpressionAtlas:Q8GYP5Gene3D:1.10.10.60GeneID:837403GO:GO:0003677GO:GO:0003700
GO:GO:0006355GO:GO:0009414GO:GO:0009416GO:GO:0009737GO:GO:0009751GO:GO:0009753GO:GO:0010118
Gramene:AT1G08810.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF641InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT1G08810
KO:K09422OMA:INHRSTYPfam:PF00249Pfscan:PS51294PhylomeDB:Q8GYP5PIR:T00737PROSITE:PS51294
Proteomes:UP000006548RefSeq:NP_172358.1SMART:SM00717SMR:Q8GYP5STRING:3702.AT1G08810.1SUPFAM:SSF46689TAIR:AT1G08810
tair10-symbols:AtMYB60tair10-symbols:MYB60UniGene:At.10912UniProt:Q8GYP5
Coordinates (TAIR10) chr1:-:2819279..2820329
Molecular Weight (calculated) 32019.00 Da
IEP (calculated) 6.14
GRAVY (calculated) -1.03
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRPPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY LRPGIKRGNF TPHEEGMIIH LQALLGNKWA SIASYLPQRT
101: DNDIKNYWNT HLKKKLNKSD SDERSRSENI ALQTSSTRNT INHRSTYASS TENISRLLEG WMRASPKSST STTFLEHKMQ NRTNNFIDHH SDQFPYEQLQ
201: GSWEEGHSKG INGDDDQGIK NSENNNGDDV HHEDGDHEDD DDHNATPPLT FIEKWLLEET STTGGQMEEM SHLMELSNML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)