suba logo
AT1G08770.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : prenylated RAB acceptor 1.E
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
prenylated RAB acceptor 1.E (PRA1.E); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: PRA1 (Prenylated rab acceptor) family protein (TAIR:AT1G55190.1); Has 522 Blast hits to 522 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 107; Fungi - 87; Plants - 296; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
BioGrid:22640eggNOG:COG5130eggNOG:KOG3142EMBL:AC003981EMBL:AJ249729EMBL:AK227363EMBL:AY088496
EMBL:BT009715EMBL:CP002684EnsemblPlants:AT1G08770EnsemblPlants:AT1G08770.1entrez:837399GeneID:837399Genevisible:Q9FRR1
GO:GO:0005783GO:GO:0005794GO:GO:0010008GO:GO:0016021GO:GO:0016192Gramene:AT1G08770.1hmmpanther:PTHR19317
hmmpanther:PTHR19317:SF3HOGENOM:HOG000238420InParanoid:Q9FRR1InterPro:IPR004895KEGG:ath:AT1G08770OMA:VVFIGWIPaxDb:Q9FRR1
Pfam:PF03208Pfam:Q9FRR1PhylomeDB:Q9FRR1PIR:T00733PRIDE:Q9FRR1PRO:PR:Q9FRR1Proteomes:UP000006548
RefSeq:NP_563826.1STRING:3702.AT1G08770.1TAIR:AT1G08770tair10-symbols:PRA1.ETMHMM:TMhelixUniGene:At.27752UniProt:Q9FRR1
Coordinates (TAIR10) chr1:+:2808933..2809562
Molecular Weight (calculated) 22416.30 Da
IEP (calculated) 6.97
GRAVY (calculated) 0.36
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MNQKPPPYGY GGAGGGGVGP SSTSNTTIIG TLSARAKQTT QSMITTLRPW REILDLSALS LPRGYDEAMA HLKHNISYFR GNYALAVLAI VFLGLIYHPM
101: SMIAFIVVFI GWILLYFSRD ANDSIVISGK EVDDKIVLVL LSLVTVLALV YTDVGENVLV SLIIGLLIVG AHGAFRNTDD LFLDEESARR GGLVSAGSGN
201: RPPSSYTPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)