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AT1G08750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptidase C13 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 779 Blast hits to 778 proteins in 243 species: Archae - 4; Bacteria - 12; Metazoa - 279; Fungi - 120; Plants - 231; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G08750-MONOMERBioCyc:ARA:GQT-2432-MONOMERBioCyc:ARA:GQT-2433-MONOMEReggNOG:COG5206eggNOG:KOG1349EMBL:AK117596EMBL:CP002684
EnsemblPlants:AT1G08750EnsemblPlants:AT1G08750.1EnsemblPlants:AT1G08750.2EnsemblPlants:AT1G08750.3entrez:837397GeneID:837397GO:GO:0003923
GO:GO:0005783GO:GO:0008233GO:GO:0016255GO:GO:0042765Gramene:AT1G08750.1Gramene:AT1G08750.2Gramene:AT1G08750.3
hmmpanther:PTHR12000hmmpanther:PTHR12000:SF1HOGENOM:HOG000204398InterPro:IPR001096InterPro:IPR028361KEGG:00231+3.-.-.-KEGG:00563+3.-.-.-
KEGG:00983+3.-.-.-KEGG:ath:AT1G08750KO:K05290merops:C13.005OMA:CNARNEYPANTHER:PTHR12000PANTHER:PTHR12000:SF1
Pfam:PF01650PhylomeDB:Q8GYI6PIRSF:PIRSF019663PIRSF:PIRSF500138PRINTS:PR00776Proteomes:UP000006548RefSeq:NP_563825.1
RefSeq:NP_849616.1RefSeq:NP_973794.1SMR:Q8GYI6STRING:3702.AT1G08750.1SwissPalm:Q8GYI6TAIR:AT1G08750UniGene:At.42256
unipathway:UPA00196UniProt:Q8GYI6
Coordinates (TAIR10) chr1:+:2801283..2804392
Molecular Weight (calculated) 44545.20 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.27
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MKILTLVMLL CYSFVSSTGD TTIHTNNWAV LVCTSRFWFN YRHMANTLSL YRTVKRLGIP DERIILMLAD DMACNARNEY PAQVFNNENH KLNLYGDNVE
101: VDYRGYEVTV ENFLRVLTGR HENAVPRSKR LLSDEGSHIL LYMTGHGGDE FLKFQDAEEL QSHDLADAVK QMKEKRRFKE LMIMVDTCQA ATLFNQLQSP
201: GVLAIGSSLK GENSYSHHLD SDIGVSVVDR FTYYTLAFFE RLNIYDNASL NSLFRSYDPR LLMSTAYYRT DLYQPHLVEV PVTNFFGSVM ETIHTDSAYK
301: AFSSKISERK INSEMPFNQL SEHDLKEELE NTNIPNDELI AEKQKCPYSQ MRADLHEKVE KLENVDTVVN LSIAVMVLAV MVSSSLLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)