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AT1G08700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Presenilin-1
Curator
Summary (TAIR10)
Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.
Computational
Description (TAIR10)
Presenilin-1 (PS1); INVOLVED IN: intracellular signaling pathway; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22A, presenilin (InterPro:IPR001108); BEST Arabidopsis thaliana protein match is: Presenilin-2 (TAIR:AT2G29900.1); Has 596 Blast hits to 445 proteins in 109 species: Archae - 4; Bacteria - 0; Metazoa - 417; Fungi - 0; Plants - 68; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
Protein Annotations
EC:3.4.23.-eggNOG:ENOG410XPZDeggNOG:KOG2736EMBL:BT026496EnsemblPlants:AT1G08700EnsemblPlants:AT1G08700.1entrez:837391
ExpressionAtlas:Q0V7S4GeneID:837391GO:GO:0000139GO:GO:0004190GO:GO:0005789GO:GO:0007219GO:GO:0016021
GO:GO:0016485Gramene:AT1G08700.1hmmpanther:PTHR10202hmmpanther:PTHR10202:SF15InterPro:IPR001108InterPro:IPR006639KEGG:ath:AT1G08700
KO:K04505merops:A22.A01OMA:DEELPAMPANTHER:PTHR10202PaxDb:Q0V7S4Pfam:O64668Pfam:PF01080
PhylomeDB:Q0V7S4PRIDE:Q0V7S4PRINTS:PR01072ProteinModelPortal:Q0V7S4RefSeq:NP_172346.1SMART:SM00730SMR:Q0V7S4
STRING:3702.AT1G08700.1TAIR:AT1G08700tair10-symbols:PS1TMHMM:TMhelixUniGene:At.26647UniProt:O64668UniProt:Q0V7S4
Coordinates (TAIR10) chr1:-:2769885..2771348
Molecular Weight (calculated) 49311.30 Da
IEP (calculated) 4.48
GRAVY (calculated) 0.53
Length 453 amino acids
Sequence (TAIR10)
(BLAST)
001: MESSILDSLG VEIIGVMAPV SICMFLVVLL TYSLSVTSDP QIRSAANLIY IENPSDSTTV KLEGSLANAI VFVVLIAAVT FILVLLFYYN FTNFLKHYMR
101: FSAFFVLGTM GGAIFLSIIQ HFSIPVDSIT CFILLFNFTI LGTLSVFAGG IPIVLRQCYM VVMGIVVAAW FTKLPEWTTW FILVALALYD LVAVLAPGGP
201: LKLLVELASS RDEELPAMVY EARPTVSSGN QRRNRGSSLR ALVGGGGVSD SGSVELQAVR NHDVNQLGRE NSHNMDYNAI AVRDIDNVDD GIGNGSRGGL
301: ERSPLVGSPS ASEHSTSVGT RGNMEDRESV MDEEMSPLVE LMGWGDNREE ARGLEESDNV VDISNRGIKL GLGDFIFYSV LVGRAAMYDL MTVYACYLAI
401: ISGLGCTLIL LSVYNRALPA LPISIMLGVV FYFLTRLLME PFVVGVTTNL MMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)