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AT1G08670.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.908
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS family protein; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G46540.1); Has 902 Blast hits to 902 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 537; Fungi - 217; Plants - 109; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
DNASU:837389eggNOG:ENOG410XSM0eggNOG:KOG2056EMBL:AC003981EMBL:AK228517EMBL:AY074494EMBL:CP002684
EnsemblPlants:AT1G08670EnsemblPlants:AT1G08670.1entrez:837389Gene3D:1.25.40.90GeneID:837389Gramene:AT1G08670.1hmmpanther:PTHR12276
hmmpanther:PTHR12276:SF10HOGENOM:HOG000070800InterPro:IPR008942InterPro:IPR013809KEGG:ath:AT1G08670OMA:MEWIDERPfam:PF01417
Pfscan:PS50942PhylomeDB:Q9FRR8PIR:B86219PIR:T00721PROSITE:PS50942Proteomes:UP000006548RefSeq:NP_172343.2
SMART:SM00273SMR:Q9FRR8STRING:3702.AT1G08670.1SUPFAM:SSF48464TAIR:AT1G08670UniGene:At.28798UniProt:Q9FRR8
Coordinates (TAIR10) chr1:-:2760419..2761551
Molecular Weight (calculated) 26544.80 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.42
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKLMQNPVL HELKKQASFF IKEKIKTARL AVTDVTAEEL LTEEVTGSDH SSIDSRSMAA ITRVSFEVDQ FQRIVKILRQ RMVVFDRKEW RGMCNTLSML
101: NHLLLNGPLS VFSEFQHERA IIEDAIKMEW IDERGFDCGL KVRNIAEKVL RLLEDDMFLK DERERNRKQS IGRITGFGNS SFVIHSETNN GRDGSLMLSN
201: HQTCENDCIA DDHPFVENEH KTAQLLLSSS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)