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AT1G08640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21841088 (2011): mitochondrion
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chloroplast J-like domain 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chloroplast J-like domain 1 (CJD1); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 82 Blast hits to 80 proteins in 30 species: Archae - 0; Bacteria - 24; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ11eggNOG:ENOG4111JJHEMBL:AF370182EMBL:AY059140EMBL:CP002684EnsemblPlants:AT1G08640EnsemblPlants:AT1G08640.1
entrez:837386GeneID:837386GO:GO:0006631GO:GO:0009507GO:GO:0009941GO:GO:0016021GO:GO:0031969
Gramene:AT1G08640.1hmmpanther:PTHR33372hmmpanther:PTHR33372:SF1InterPro:IPR021788KEGG:ath:AT1G08640OMA:PWGPRFTPfam:PF11833
PhylomeDB:Q93WG3Proteomes:UP000006548RefSeq:NP_563823.1SMR:Q93WG3STRING:3702.AT1G08640.1TAIR:AT1G08640tair10-symbols:CJD1
TMHMM:TMhelixUniGene:At.16960UniProt:Q93WG3
Coordinates (TAIR10) chr1:-:2748714..2751209
Molecular Weight (calculated) 32904.00 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.07
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPALSTSCS SVMAFSTSNA LRYHHPQISL RNSLRAPKSP SFVRLPLGKV LQSRIVIRAA SSAAGNPQSD ADFNPYEVLG VNPIEGFDKI KQTYGRKLKD
101: AQRSGDEATA ALLEKAYDKL MYAQLMNRKK GVTFGSFKVS KDIKYADKQP IIPWGPRFSR SSKNDMLINL AISVVFSAWI AIKRNVEYKP LQFMSFVFVY
201: RIFEKLKSFE APSSPIYNEE GEESGRGLRM GKRLLRSLSL VFGSILLASL AYTGFLNGIE YMGYSIPMVL YNNQELIVTA SSAFMLYVIA SFYR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)