suba logo
AT1G08630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : threonine aldolase 1
Curator
Summary (TAIR10)
Encodes a threonine aldolase, involved in threonine degradation to glycine. Primarily expressed in seeds and seedlings.
Computational
Description (TAIR10)
threonine aldolase 1 (THA1); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: threonine aldolase 2 (TAIR:AT3G04520.1); Has 4107 Blast hits to 4101 proteins in 1235 species: Archae - 29; Bacteria - 2521; Metazoa - 93; Fungi - 250; Plants - 87; Viruses - 0; Other Eukaryotes - 1127 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1115-MONOMERBioCyc:ARA:GQT-1116-MONOMERBioCyc:ARA:GQT-1117-MONOMERBioCyc:ARA:GQT-1118-MONOMEREC:4.1.2.48eggNOG:COG2008eggNOG:KOG1368
EMBL:AC003981EMBL:AK230078EMBL:AK317034EMBL:AY080670EMBL:AY086734EMBL:AY117227EMBL:CP002684
EnsemblPlants:AT1G08630EnsemblPlants:AT1G08630.1EnsemblPlants:AT1G08630.2EnsemblPlants:AT1G08630.3EnsemblPlants:AT1G08630.4EnsemblPlants:AT1G08630.5entrez:837385
ExpressionAtlas:Q8RXU4Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:837385Genevisible:Q8RXU4GO:GO:0004793GO:GO:0005829
GO:GO:0006545GO:GO:0006567GO:GO:0008732gramene_pathway:4.1.2.5gramene_pathway:GLYSYN2-PWYhmmpanther:PTHR10289hmmpanther:PTHR10289:SF5
HOGENOM:HOG000219824InParanoid:Q8RXU4InterPro:IPR001597InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424InterPro:IPR023603
KEGG:ath:AT1G08630KO:K01620OMA:THRHIDDPaxDb:Q8RXU4Pfam:PF01212Pfam:Q8RXU4PhylomeDB:Q8RXU4
PIR:T00716PIRSF:PIRSF017617PRIDE:Q8RXU4PRO:PR:Q8RXU4ProteinModelPortal:Q8RXU4Proteomes:UP000006548RefSeq:NP_001031001.2
RefSeq:NP_001077492.1RefSeq:NP_563822.1RefSeq:NP_849614.1RefSeq:NP_849615.1SMR:Q8RXU4STRING:3702.AT1G08630.1SUPFAM:SSF53383
TAIR:AT1G08630tair10-symbols:THA1UniGene:At.57057UniPathway:UPA00044UniProt:Q8RXU4
Coordinates (TAIR10) chr1:-:2743948..2745685
Molecular Weight (calculated) 38944.40 Da
IEP (calculated) 7.36
GRAVY (calculated) -0.13
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMRSVDLRS DTVTRPTDAM REAMCNAEVD DDVLGYDPTA RRLEEEMAKM MGKEAALFVP SGTMGNLISV MVHCDVRGSE VILGDNCHIH VYENGGISTI
101: GGVHPKTVKN EEDGTMDLEA IEAAIRDPKG STFYPSTRLI CLENTHANSG GRCLSVEYTE KVGEIAKRHG VKLHIDGARL FNASIALGVP VHKLVKAADS
201: VQVCLSKGLG APVGSVIVGS QSFIEKAKTV RKTLGGGMRQ IGVLCAAALV ALQENLPKLQ HDHKKAKLLA EGLNQMKGIR VNVAAVETNM IFMDMEDGSR
301: LTAEKLRKNL EENGILLIRG NSSRIRIVIH HQITTSDVHY TLSCFQQAML TMQEPSRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)