AT1G08620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2); Has 2173 Blast hits to 1649 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 1159; Fungi - 446; Plants - 392; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2737554..2743370 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135000.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1209 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGTELMRICV KEDSDDLPSV PPGFESYATF TLKRVVPATT SDKAKTPAIE SVSATEQAKM EVESDEAKAA RALRRRPWIN HSGCDDDGDC AANNDNAASQ 0101: NPDQNCDVKP ALPKGVVRGC EECKDCQKVT ARWHPDEARR PDLEDAPVFY PSEEEFEDTL NYIAKIRPEA EKYGICRIVP PPSWKPPCPL KEKQVWEGSK 0201: FTTRVQRVDK LQNRSSMKKI SKLPNQMRKK KRKCMKMGMD SVTNGMGDPC SASTGMNELE TFGFEPGPGF TLKDFQKYAD EFKAQYFKKS ETSTDDKCKV 0301: DNSIDCWEPA LEDVEGEYWR IVDKATEEIE VLYGADLETG VFGSGFPKIS SSHNASSSED KYAKSGWNLN NFPRLPGSLL KYEGSDISGV LVPWLYIGMC 0401: FSSFCWHVED HHLYSLNYMH WGAPKLWYGV GGKDAVKLEE AMRKHLPDLF EEQPDLLHKL VTQLSPSKLK TAGVPVHRCV QHAGEFVLTF PRAYHAGFNS 0501: GFNCAEAVNV APVDWLPHGQ IAIELYCQQG RKTSISHDKL LLGAAREVVK ADWELNLLRK NTVDNLRWKA FSAKDGILAK TLKARIDMER TRREFLCNSS 0601: LALKMHSNFD ATNERECCIC FFDLHLSAAG CRCSPEKYSC LTHVKELCSC PWVTKYFLFR YDIDELNVLV EAVEGKLSSV YRWARQDLGL ALSTDVSGSK 0701: MEIDEEGKVH KDPTPQTTAL SGKDLQLKVT SKEVSKELEK TSKLSHVNLL LKEKEEQITS SHCMKPVKEE TVCDSSDPNV SACQPSEGGI ICMTAVKSAS 0801: GKKNSQSLPN DVILLSDDEY DIPRKRGSVR RDAISSGKKL EIRERPTHVL ALEASAKIAA PICQREGDSL RDTRNTISLP TNDQKTMRRD VPSSTSHAEV 0901: NAEATGLTQD ICNRMATNSH GGGKPTSCKS KNSGGLAIVD VVDGTRSSSG TPSCSQNNSP DRFIRQKGPR IAKVVRRINC NVEPLSYGCV LSGKSWCSRR 1001: AIFPKGFRSR VKYINILDPT NMCFYISEIL DAGRNSPLFM VYLESNPSEV FVHMSPTRCW EMVRERVNQE ITKQHKAGKS DLPPLQPSGS PDGFEMFGYS 1101: SPAIVQAIEA LDVNRVCTDY WDSRPYSRPQ VQFPANPLLR EANTSGRSNV GNLQLNPGHH ISPTGINSIL KVLFKKASME ELSSLQEVLS ETNSDMVTEL 1201: VKEEIQNRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)