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AT1G08540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNApolymerase sigma subunit 2
Curator
Summary (TAIR10)
Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.
Computational
Description (TAIR10)
RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0568eggNOG:ENOG410IJ1ZEMBL:AB004293EMBL:AB004820EMBL:AB019943EMBL:AC003981EMBL:AC006932
EMBL:AF015543EMBL:AK118947EMBL:BT030346EMBL:CP002684EMBL:Y15362EnsemblPlants:AT1G08540EnsemblPlants:AT1G08540.1
entrez:837376Gene3D:1.10.10.10GeneID:837376Genevisible:O22056GO:GO:0001053GO:GO:0003677GO:GO:0003700
GO:GO:0006352GO:GO:0006399GO:GO:0009507GO:GO:0009658GO:GO:0010114GO:GO:0016987GO:GO:0071482
GO:GO:2001141Gramene:AT1G08540.1hmmpanther:PTHR30603HOGENOM:HOG000270273InParanoid:O22056InterPro:IPR000943InterPro:IPR007624
InterPro:IPR007627InterPro:IPR007630InterPro:IPR011991InterPro:IPR013324InterPro:IPR013325InterPro:IPR014284InterPro:IPR016262
iPTMnet:O22056KEGG:ath:AT1G08540OMA:KQVIRWRPaxDb:O22056Pfam:O22056Pfam:PF04539Pfam:PF04542
Pfam:PF04545PhylomeDB:O22056PIR:T00707PIRSF:PIRSF000767PRIDE:O22056PRINTS:PR00046PRO:PR:O22056
PROSITE:PS00716ProteinModelPortal:O22056Proteomes:UP000006548RefSeq:NP_172330.1scanprosite:PS00716SMR:O22056STRING:3702.AT1G08540.1
SUPFAM:SSF88659SUPFAM:SSF88946TAIR:AT1G08540tair10-symbols:ABC1tair10-symbols:ATSIG1tair10-symbols:ATSIG2tair10-symbols:SIG1
tair10-symbols:SIG2tair10-symbols:SIGAtair10-symbols:SIGBTIGRfam:TIGR02937TIGRFAMs:TIGR02937UniGene:At.23349UniProt:O22056
Coordinates (TAIR10) chr1:+:2703461..2706696
Molecular Weight (calculated) 64057.70 Da
IEP (calculated) 10.09
GRAVY (calculated) -0.55
Length 572 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSCLLPQFK CPPDSFSIHF RTSFCAPKHN KGSVFFQPQC AVSTSPALLT SMLDVAKLRL PSFDTDSDSL ISDRQWTYTR PDGPSTEAKY LEALASETLL
101: TSDEAVVVAA AAEAVALARA AVKVAKDATL FKNSNNTNLL TSSTADKRSK WDQFTEKERA GILGHLAVSD NGIVSDKITA SASNKESIGD LESEKQEEVE
201: LLEEQPSVSL AVRSTRQTER KARRAKGLEK TASGIPSVKT GSSPKKKRLV AQEVDHNDPL RYLRMTTSSS KLLTVREEHE LSAGIQDLLK LERLQTELTE
301: RSGRQPTFAQ WASAAGVDQK SLRQRIHHGT LCKDKMIKSN IRLVISIAKN YQGAGMNLQD LVQEGCRGLV RGAEKFDATK GFKFSTYAHW WIKQAVRKSL
401: SDQSRMIRLP FHMVEATYRV KEARKQLYSE TGKHPKNEEI AEATGLSMKR LMAVLLSPKP PRSLDQKIGM NQNLKPSEVI ADPEAVTSED ILIKEFMRQD
501: LDKVLDSLGT REKQVIRWRF GMEDGRMKTL QEIGEMMGVS RERVRQIESS AFRKLKNKKR NNHLQQYLVA QS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)