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AT1G08470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21472856 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : strictosidine synthase-like 3
Curator
Summary (TAIR10)
Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.
Computational
Description (TAIR10)
strictosidine synthase-like 3 (SSL3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 1252 Blast hits to 1238 proteins in 269 species: Archae - 3; Bacteria - 366; Metazoa - 225; Fungi - 17; Plants - 480; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2306-MONOMEReggNOG:COG3386eggNOG:KOG1520EMBL:AC006932EMBL:AF419594EMBL:AY064047EMBL:AY117314
EMBL:CP002684EnsemblPlants:AT1G08470EnsemblPlants:AT1G08470.1entrez:837368Gene3D:2.120.10.30GeneID:837368Genevisible:Q8VWF6
GO:GO:0005774GO:GO:0005783GO:GO:0009058GO:GO:0016788Gramene:AT1G08470.1hmmpanther:PTHR10426hmmpanther:PTHR10426:SF24
HOGENOM:HOG000223915InParanoid:Q8VWF6InterPro:IPR004141InterPro:IPR011042InterPro:IPR018119KEGG:ath:AT1G08470OMA:HRNIFTH
PANTHER:PTHR10426PaxDb:Q8VWF6Pfam:PF03088Pfam:Q8VWF6PhylomeDB:Q8VWF6PIR:H86217PRIDE:Q8VWF6
PRO:PR:Q8VWF6ProteinModelPortal:Q8VWF6Proteomes:UP000006548RefSeq:NP_563818.1SMR:Q8VWF6STRING:3702.AT1G08470.1SUPFAM:SSF63829
TAIR:AT1G08470tair10-symbols:SSL3UniGene:At.16363UniProt:Q8VWF6
Coordinates (TAIR10) chr1:-:2682262..2683977
Molecular Weight (calculated) 44038.90 Da
IEP (calculated) 8.18
GRAVY (calculated) -0.24
Length 390 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMSILAKIF LVFAIYCAID PFSHSSISKF PDFKTYKIDM PPLSSLPKER DRQNLLQNSE IRFLNEVQGP ESIAFDPQGR GPYTGVADGR ILFWNGTRWT
101: DFAYTSNNRS ELCDPKPSLL DYLKDEDICG RPLGLRFDKK NGDLYIADAY LGIMKVGPEG GLATSVTNEA DGVPLRFTND LDIDDEGNVY FTDSSSFFQR
201: RKFMLLIVSG EDSGRVLKYN PKTKETTTLV RNLQFPNGLS LGKDGSFFIF CEGSIGRLRK YWLKGEKAGT SEVVALLHGF PDNIRTNKDG DFWVAVHCHR
301: NIFTHLMAHY PRVRKFFLKL PISVKFQYLL QVGGWPHAVA VKYSEEGKVL KVLEDSKGKV VKAVSEVEEK DGKLWMGSVL MSFIAVYDLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)