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AT1G08450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : endoplasmic reticulum 19717464
AmiGO : endoplasmic reticulum 19763087
SwissProt : endoplasmic reticulum 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18931141 (2008): endoplasmic reticulum
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:24393051 (2015): endoplasmic reticulum
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15574830 (2004): plasma membrane
FP Images

Arabidopsis cell culture (peroxisomal marker)

At1g-GFP-08450
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel

onion epidermal cell layer (peroxisomal marker)

At1g-GFP-08450
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : calreticulin 3
Curator
Summary (TAIR10)
Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels. Non-receptor component required for EFR-mediated immunity. Mutants show de-repressed anthocyanin accumulation in the presence of elf18, and EFR accumulation and signalling.
Computational
Description (TAIR10)
calreticulin 3 (CRT3); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1b (TAIR:AT1G09210.1); Has 1183 Blast hits to 1180 proteins in 302 species: Archae - 0; Bacteria - 0; Metazoa - 620; Fungi - 150; Plants - 256; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Protein Annotations
BioGrid:22606DIP:DIP-48930NeggNOG:ENOG410XRR7eggNOG:KOG0674EMBL:AC006932EMBL:AY056320EMBL:CP002684
EMBL:U66345EnsemblPlants:AT1G08450EnsemblPlants:AT1G08450.1entrez:837365ExpressionAtlas:O04153Gene3D:2.60.120.200GeneID:837365
Genevisible:O04153GO:GO:0005509GO:GO:0005783GO:GO:0005788GO:GO:0005789GO:GO:0006457GO:GO:0009626
GO:GO:0010204GO:GO:0030246GO:GO:0042742GO:GO:0046283hmmpanther:PTHR11073hmmpanther:PTHR11073:SF6HOGENOM:HOG000192435
InParanoid:O04153InterPro:IPR001580InterPro:IPR009033InterPro:IPR009169InterPro:IPR013320InterPro:IPR018124ncoils:Coil
OMA:IFLEEHFPANTHER:PTHR11073PaxDb:O04153Pfam:O04153Pfam:PF00262PhylomeDB:O04153PIRSF:PIRSF002356
PRIDE:O04153PRINTS:PR00626PRO:PR:O04153PROSITE:PS00014PROSITE:PS00803PROSITE:PS00804PROSITE:PS00805
ProteinModelPortal:O04153Proteomes:UP000006548Reactome:R-ATH-901042RefSeq:NP_563816.1scanprosite:PS00803scanprosite:PS00804SMR:O04153
STRING:3702.AT1G08450.1SUPFAM:SSF49899SUPFAM:SSF63887TAIR:AT1G08450tair10-symbols:AtCRT3tair10-symbols:CRT3tair10-symbols:EBS2
tair10-symbols:PSL1TMHMM:TMhelixUniGene:At.24804UniProt:O04153
Coordinates (TAIR10) chr1:-:2668008..2671800
Molecular Weight (calculated) 49846.30 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.98
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLPQNKLSF FCFFFLVSVL TLAPLAFSEI FLEEHFEGGW KSRWVLSDWK RNEGKAGTFK HTAGKWPGDP DNKGIQTYND AKHYAISAKI PEFSNKNRTL
101: VVQYSVKIEQ DIECGGAYIK LLSGYVNQKQ FGGDTPYSLM FGPDICGTQT KKLHVIVSYQ GQNYPIKKDL QCETDKLNHF YTFILRPDAS YSVLVDNKER
201: EFGSMYTDWD ILPPRKIKVK NAKKPEDWDD REYIDDPNDV KPEGFDSIPR EIPDRKAKEP EDWDEEENGL WEPPKIPNSA YKGPWKAKRI KNPNYKGKWK
301: NPWIDNPEFE DDPDLYVLKS IKYAGIEVWQ VKAGSIFDNI LICDDPAYAR SIVDDYFAQH RESEKELFAE AEKERKARED EEARIAREEG ERRRKERDHR
401: YGDRRRRYKR PNPRDYMDDY HDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)