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AT1G08380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem I subunit O
Curator
Summary (TAIR10)
Encodes subunit O of photosystem I.
Computational
Description (TAIR10)
photosystem I subunit O (PSAO); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, photosynthesis, light harvesting in photosystem I; LOCATED IN: thylakoid, photosystem I, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I PsaO (InterPro:IPR017498); Has 161 Blast hits to 161 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G08380-MONOMERBioGrid:22599eggNOG:ENOG410IXNQeggNOG:ENOG4112CG2EMBL:AC006932EMBL:AJ493060EMBL:AY050960
EMBL:AY087368EMBL:AY091345EMBL:AY136345EMBL:BT000191EMBL:CP002684EnsemblPlants:AT1G08380EnsemblPlants:AT1G08380.1
entrez:837358GeneID:837358Genevisible:Q949Q5GO:GO:0009507GO:GO:0009522GO:GO:0009535GO:GO:0009579
GO:GO:0009767GO:GO:0009768GO:GO:0016021Gramene:AT1G08380.1hmmpanther:PTHR36311hmmpanther:PTHR36311:SF1HOGENOM:HOG000240787
InParanoid:Q949Q5InterPro:IPR017498KEGG:ath:AT1G08380KO:K14332OMA:PVTARNPPaxDb:Q949Q5Pfam:Q949Q5
PhylomeDB:Q949Q5PRIDE:Q949Q5PRO:PR:Q949Q5Proteomes:UP000006548RefSeq:NP_563815.1STRING:3702.AT1G08380.1TAIR:AT1G08380
tair10-symbols:PSAOTIGRfam:TIGR03059TIGRFAMs:TIGR03059TMHMM:TMhelixUniGene:At.23691UniProt:Q949Q5
Coordinates (TAIR10) chr1:-:2641004..2641739
Molecular Weight (calculated) 15144.40 Da
IEP (calculated) 10.37
GRAVY (calculated) 0.32
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATFATPST VIGLGGSSIT TKPFSSSFLK PTLSAKNPLR LAGASGGRVT CFERNWLRRD LNVVGFGLIG WLAPSSIPAI NGKSLTGLFF DSIGTELAHF
101: PTPPALTSQF WLWLVTWHLG LFLCLTFGQI GFKGRTEDYF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)