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AT1G08360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L1p/L10e family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G27530.2); Has 3821 Blast hits to 3820 proteins in 1247 species: Archae - 280; Bacteria - 1757; Metazoa - 462; Fungi - 186; Plants - 511; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink).
Protein Annotations
BioGrid:22597eggNOG:COG0081eggNOG:KOG1570EMBL:AC006932
EMBL:AY065077EMBL:AY114542EMBL:CP002684EnsemblPlants:AT1G08360
EnsemblPlants:AT1G08360.1entrez:837356Gene3D:3.30.190.20Gene3D:3.40.50.790
GeneID:837356Genevisible:Q8VZB9GO:GO:0003723GO:GO:0003735
GO:GO:0005829GO:GO:0005886GO:GO:0006412GO:GO:0009506
GO:GO:0022625GO:GO:0022626Gramene:AT1G08360.1hmmpanther:PTHR23105
hmmpanther:PTHR23105:SF48HOGENOM:HOG000207014InParanoid:Q8VZB9InterPro:IPR002143
InterPro:IPR016094InterPro:IPR016095InterPro:IPR023673InterPro:IPR023674
InterPro:IPR028364KEGG:ath:AT1G08360KO:K02865OMA:ITSESCE
PaxDb:Q8VZB9Pfam:PF00687Pfam:Q8VZB9PhylomeDB:Q8VZB9
PIR:C86217PIRSF:PIRSF002155PRIDE:Q8VZB9PRO:PR:Q8VZB9
PROSITE:PS01199ProteinModelPortal:Q8VZB9Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_563813.2scanprosite:PS01199SMR:Q8VZB9
STRING:3702.AT1G08360.1SUPFAM:SSF56808TAIR:AT1G08360UniGene:At.24240
UniProt:Q8VZB9
Coordinates (TAIR10) chr1:+:2636231..2637694
Molecular Weight (calculated) 24470.40 Da
IEP (calculated) 10.62
GRAVY (calculated) -0.42
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKLQSEAVR EAITTITGKS EAKKRNFVET IELQIGLKNY DPQKDKRFSG SVKLPHIPRP KMKICMLGDA QHVEEAEKMG LENMDVESLK KLNKNKKLVK
101: KLAKKYHAFL ASESVIKQIP RLLGPGLNKA GKFPTLVSHQ ESLESKVNET KATVKFQLKK VLCMGVAVGN LSMEEKQIFQ NVQMSVNFLV SLLKKNWQNV
201: RCLYLKSTMG PPQRIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)