suba logo
AT1G08190.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
golgi 0.847
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar protein sorting 41
Curator
Summary (TAIR10)
Might be involved in protein sorting to the vacuole.
Computational
Description (TAIR10)
vacuolar protein sorting 41 (VPS41); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding; INVOLVED IN: gravitropism, protein targeting to vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); Has 13288 Blast hits to 4251 proteins in 360 species: Archae - 4; Bacteria - 340; Metazoa - 7814; Fungi - 1141; Plants - 584; Viruses - 346; Other Eukaryotes - 3059 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQBCeggNOG:KOG2066EMBL:AC011438EMBL:CP002684EMBL:U86663EnsemblPlants:AT1G08190EnsemblPlants:AT1G08190.1
entrez:837340Gene3D:2.130.10.10GeneID:837340Genevisible:P93043GO:GO:0005770GO:GO:0006623GO:GO:0008270
GO:GO:0009630GO:GO:0016192GO:GO:0030897GO:GO:0033263GO:GO:0035542GO:GO:0042144GO:GO:0051020
Gramene:AT1G08190.1hmmpanther:PTHR12616HOGENOM:HOG000247002InParanoid:P93043InterPro:IPR000547InterPro:IPR001680InterPro:IPR015943
InterPro:IPR016902InterPro:IPR017986iPTMnet:P93043KEGG:ath:AT1G08190ncoils:CoilOMA:PALKYERPaxDb:P93043
Pfam:P93043Pfam:PF00637Pfscan:PS50082Pfscan:PS50236PhylomeDB:P93043PIRSF:PIRSF028921PRIDE:P93043
PRO:PR:P93043PROSITE:PS50082PROSITE:PS50236ProteinModelPortal:P93043Proteomes:UP000006548RefSeq:NP_172297.2SMART:SM00299
SMART:SM00320SMR:P93043STRING:3702.AT1G08190.1SUPFAM:SSF50978SUPFAM:SSF57850TAIR:AT1G08190tair10-symbols:ATVAM2
tair10-symbols:ATVPS41tair10-symbols:VAM2tair10-symbols:VPS41tair10-symbols:ZIP2UniGene:At.21938UniGene:At.27391UniGene:At.69135
UniProt:P93043
Coordinates (TAIR10) chr1:+:2567652..2573142
Molecular Weight (calculated) 110284.00 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.40
Length 980 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVPPENGV DGDDEREEEE EDEEEEEEEE EEENGDEAEE EPRLKYQRMG GNVPALLSND AASCIAVAAR MIALGTHDGT VRILDLLGNQ VKEFRAHTAP
101: VNDINFDTEG EYIGSCSDDG SVVINSLFTD DEKMKFDYHR PMKAISLDPD YTKKQSKRFV AGGLAGHLYM NSKKWFGNKD QVLHSGEGPI HSVKWRGSLI
201: AWANDVGVKV YDTAKDQRVT FIEKPRGSPR PEALLPHLVW QDDTLLVIGW GTSVKIASIK SDQQQTGTFR QIQMSSLTQV DIVASFQTSY YISGIAPFGD
301: SLVILAYIPI EGDGEKEFSS TTTLSRQGNA QRPEIRIVSW NNDELTMDAL PVHGFEHYKA KDYSLAHAPF PGSSYAGGQW AAGDEPLYYI VSPKDVVIAK
401: PRDAEDHINW LLQHGFHEKA LAAVEASEGR TELIDKVGAG YLDHLIVERK YAEAASLCPK LLRGSASAWE RWVFHFAQLR QLPVLVPYMP TDNPRLKDTV
501: YEVALVALAT NPSYHKELLS AVKSWPRSVY SALTVISAIE PQLNTSSMTD ALKEALAELY VIDGQYQKAF SLYADLLKPE VFDFIEKYSL HEAIRGKVVQ
601: LMLLDCKRAT VLFIQNRDLI PPSEVVPQLL KAGKNPQVLK AGKKCDSRYY LYLYLHALFE VSHDTGKDFH DMQVELYAEY DTKMLLPFLR SSQHYKLEKA
701: YELCVKKDFL REQVFVLGRM GNAKQALAVI INKLGDIEEA VEFVSMQHDD DLWEELIKQC LNKPEMVGLL LEHTVGNLDP LYIVNMVPNG LEIPRLRDRL
801: VKIVTDYRTE TSLRHGCNDI LKTDIVNLLV KCFNEARRGV CLSHEDDDSR AKREDNNRSS FSQRMVVDKS LSIKMTEVKS KTRGDTRCCM CFDPVSIRGD
901: TVVVFFCCHA YHETCLMDAA FSNNNHKTTK GSSGYEYSYD NGVDEEEEDE EEDEDGDGDR PGRSRLRCIL CTTAAAASAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)