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AT1G08180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:22580eggNOG:ENOG410JS31eggNOG:ENOG4111BJ2EMBL:AC011438EMBL:AC026875EMBL:AK227946EMBL:BT004747
EMBL:BT005800EMBL:CP002684EnsemblPlants:AT1G08180EnsemblPlants:AT1G08180.1entrez:837339GeneID:837339Genevisible:Q9SGE2
GO:GO:0004860GO:GO:0005634GO:GO:0007049Gramene:AT1G08180.1hmmpanther:PTHR33142HOGENOM:HOG000153460InParanoid:Q9SGE2
IntAct:Q9SGE2KEGG:ath:AT1G08180OMA:LRFFEATPaxDb:Q9SGE2Pfam:Q9SGE2PhylomeDB:Q9SGE2PIR:B86216
PRO:PR:Q9SGE2Proteomes:UP000006548RefSeq:NP_172296.1STRING:3702.AT1G08180.1TAIR:AT1G08180UniGene:At.42272UniProt:Q9SGE2
Coordinates (TAIR10) chr1:-:2564741..2565076
Molecular Weight (calculated) 12911.10 Da
IEP (calculated) 6.52
GRAVY (calculated) -1.27
Length 111 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKLLETLEE EKTVEQKPRS QEEEDHQDSS KKEELLESLC TPTSSDHKIP EVETCPPPPR KRPREISLTK KTRLSKDLRF FEATDVGSQE VETLFVHEPN
101: HVRKKRRSNS A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)