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AT1G08170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT2G28720.1); Has 3412 Blast hits to 3396 proteins in 350 species: Archae - 0; Bacteria - 51; Metazoa - 2306; Fungi - 230; Plants - 467; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111NV5eggNOG:KOG1744EMBL:AC011438EMBL:AC026875EMBL:CP002684EMBL:DQ056448EnsemblPlants:AT1G08170
EnsemblPlants:AT1G08170.1entrez:837338Gene3D:1.10.20.10GeneID:837338Genevisible:Q9SGE3GO:GO:0000786GO:GO:0003677
GO:GO:0005634Gramene:AT1G08170.1hmmpanther:PTHR23428HOGENOM:HOG000231213InParanoid:Q9SGE3InterPro:IPR000558InterPro:IPR007125
InterPro:IPR009072KEGG:ath:AT1G08170KO:K11252OMA:RYVYKVMPANTHER:PTHR23428PaxDb:Q9SGE3Pfam:PF00125
Pfam:Q9SGE3PhylomeDB:Q9SGE3PRIDE:Q9SGE3PRINTS:PR00621PRO:PR:Q9SGE3ProteinModelPortal:Q9SGE3Proteomes:UP000006548
RefSeq:NP_172295.1SMART:SM00427SMR:Q9SGE3STRING:3702.AT1G08170.1SUPFAM:SSF47113TAIR:AT1G08170UniGene:At.58337
UniProt:Q9SGE3
Coordinates (TAIR10) chr1:-:2562941..2563672
Molecular Weight (calculated) 27222.40 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.82
Length 243 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPRKPKVVS VTKKKKVVEE TIKVTVTEEG DPCVITETAN DQETQDLTFS IPVGENVTTV EIPVEVPDER SLPVGENVTT VKIPVDDRDE SSPQPPETPV
101: EVRDEPSPQP PETPASKSEG TLKKTDKVEK KQENKKKKKK KKRDDLAGDE YRRYVYKVMK QVHPDLGITS KAMTVVNMFM GDMFERIAQE AARLSDYTKR
201: RTLSSREIEA AVRLVLPGEL SRHAVAEGSK AVSNFVGYDS RKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)