AT1G08135.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.748 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : cation/H+ exchanger 6B | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
cation/H+ exchanger 6B (CHX6B); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G28170.1); Has 1422 Blast hits to 1406 proteins in 439 species: Archae - 64; Bacteria - 709; Metazoa - 0; Fungi - 111; Plants - 510; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:2548819..2551473 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 90117.50 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.18 | ||||||||||||||||||||||||||||||||||||
Length | 796 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDAENATWRK EFMWNNDEKR AEMGTKMFCD VSPHIMLNSH GVAEKMASGS KGMDFWEYPL PQLEIIILSI FLLWRLFDML FKKLGVPIPK FTSMMLVGAV 101: LSEMFGSMQI PCLKHIFIHY NQYMTKVPDT IGAFAFVLDW FLRGVTTDVG IMKKSGTKSV VIGITSMIIP WQIGKLLYSS REKSSILTMT EMEYTVMTFT 201: MSMTPFTCVN MLLTDLKIVH TDFGQIAQSA GMVTDLLAFF LTVSAYVSRD ETQGVKMGLA FMAFFIFVYL VRQFMLWVIR HTPEGAPVKN VYLYIGLLLA 301: YLSYLYWSRF LFFGPLGAFA LGLAVPNGPP LGSVFIQKFD SFNEGIFLPL FGSLSMIKLD WSFLRKEFGN GRHLHGHMYE CFSFLPIVYI AKFATSFLAA 401: LATKIPLRDS IILGVIMGTK SSFELGYVLT AFEKDRISLE VLSLLGVYIL VNSLLTPMAI HFLYDRSKRF VCYGRRNLKE KPEMQTLVCI NKPDNITSMI 501: SLLRATSPSK DSPMECCVLH LIELLGQATP TFISHQLQKP KPGSRSYSEN VISSFQLFQE VYWDSASINM FTSLTSAKEM HEQICWFALS QGSNLILLSF 601: HRTWEPNGNV IISDDQTLRS LNLNVLKRAP CSVGIFVYRK PIWQTKALES PCRVCLIYVG GNDDKEALAL ADHMRGNQQV ILTVLRLIPT SYADESSLRI 701: HSQMVDMNRH EDQRPGDKST IIDWTVGDGT ETSKILHSVS YDYDLFIVGR RSGVGTTVTR GLGDWMEFEE LGVIGDLLAS EYFPSRASVL VVQQQE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)