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AT1G08135.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.748
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : cation/H+ exchanger 6B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
cation/H+ exchanger 6B (CHX6B); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: Cation/hydrogen exchanger family protein (TAIR:AT2G28170.1); Has 1422 Blast hits to 1406 proteins in 439 species: Archae - 64; Bacteria - 709; Metazoa - 0; Fungi - 111; Plants - 510; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0475eggNOG:KOG1650EMBL:AC011438EMBL:AC026875
EMBL:CP002684EnsemblPlants:AT1G08135EnsemblPlants:AT1G08135.1entrez:837334
GeneID:837334Genevisible:P0CG16GO:GO:0006813GO:GO:0015299
GO:GO:0016021Gramene:AT1G08135.1hmmpanther:PTHR32468hmmpanther:PTHR32468:SF17
HOGENOM:HOG000091141InterPro:IPR006153KEGG:ath:AT1G08135OMA:CDVSPHI
PaxDb:P0CG16Pfam:P0CG16Pfam:PF00999PIR:A86216
PRIDE:P0CG16PRO:PR:P0CG16ProteinModelPortal:P0CG16Proteomes:UP000006548
RefSeq:NP_849610.2STRING:3702.AT1G08135.1TAIR:AT1G08135tair10-symbols:ATCHX6B
tair10-symbols:CHX6BTMHMM:TMhelixUniGene:At.51526UniProt:P0CG16
Coordinates (TAIR10) chr1:-:2548819..2551473
Molecular Weight (calculated) 90117.50 Da
IEP (calculated) 7.41
GRAVY (calculated) 0.18
Length 796 amino acids
Sequence (TAIR10)
(BLAST)
001: MDAENATWRK EFMWNNDEKR AEMGTKMFCD VSPHIMLNSH GVAEKMASGS KGMDFWEYPL PQLEIIILSI FLLWRLFDML FKKLGVPIPK FTSMMLVGAV
101: LSEMFGSMQI PCLKHIFIHY NQYMTKVPDT IGAFAFVLDW FLRGVTTDVG IMKKSGTKSV VIGITSMIIP WQIGKLLYSS REKSSILTMT EMEYTVMTFT
201: MSMTPFTCVN MLLTDLKIVH TDFGQIAQSA GMVTDLLAFF LTVSAYVSRD ETQGVKMGLA FMAFFIFVYL VRQFMLWVIR HTPEGAPVKN VYLYIGLLLA
301: YLSYLYWSRF LFFGPLGAFA LGLAVPNGPP LGSVFIQKFD SFNEGIFLPL FGSLSMIKLD WSFLRKEFGN GRHLHGHMYE CFSFLPIVYI AKFATSFLAA
401: LATKIPLRDS IILGVIMGTK SSFELGYVLT AFEKDRISLE VLSLLGVYIL VNSLLTPMAI HFLYDRSKRF VCYGRRNLKE KPEMQTLVCI NKPDNITSMI
501: SLLRATSPSK DSPMECCVLH LIELLGQATP TFISHQLQKP KPGSRSYSEN VISSFQLFQE VYWDSASINM FTSLTSAKEM HEQICWFALS QGSNLILLSF
601: HRTWEPNGNV IISDDQTLRS LNLNVLKRAP CSVGIFVYRK PIWQTKALES PCRVCLIYVG GNDDKEALAL ADHMRGNQQV ILTVLRLIPT SYADESSLRI
701: HSQMVDMNRH EDQRPGDKST IIDWTVGDGT ETSKILHSVS YDYDLFIVGR RSGVGTTVTR GLGDWMEFEE LGVIGDLLAS EYFPSRASVL VVQQQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)