AT1G07990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SIT4 phosphatase-associated family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT2G28360.1); Has 1048 Blast hits to 891 proteins in 200 species: Archae - 0; Bacteria - 31; Metazoa - 354; Fungi - 329; Plants - 109; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:2477413..2482898 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89593.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.20 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 802 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFWKLTSLSA SSPVEIILDK ENFTLEELLD EEEIIQECKA LNSRLINFLR DKAQVEQLLR YIVEEPPQDA DSKRAFKFPF ISCEIFTCEI DVILKTLVED 101: EELMNLLFSF LEPNRPHSAL LAGYFSKVVI CLMIRKTAAL MNYVKGHQNV FCQLVDLIGI TSIMEVLVRL VGADDQVYPN FLDVMQWLAD SNLLEMIVDK 201: LKPSSPPEVQ ANAAETLCAI SRNAPSALAT QLSSPGYVAK IFGHALEDSH SKSGLVHSLS VCTSLLDPRR SAVSSSMFNS YRGQHMFESP VPVSPETIGA 301: MLPKLNDLLM LLTVASDSTV LPTTYGELRP PLGKHRLKIV EFIAVLLKTR SEAAQKELVS SGTIKRTLDL FFEYPYNNAL HHQVESIILS CLENKSDLMV 401: NHILRDCDLI GKFLLSDRDS NLLGDSQPTV AASGKKKPRV GYVGHITRIS NKIGQLSNSN GQIKAYLQEN SEWNEWQGSV LQDRNTVENV NRWGCGRPTT 501: LQDRTRDSDE EDRDYDVAAL ANNLSQAFRY KIYGNDDNEE DHNALDRDDD DVYFDDESAE VVISSLRLGD DQGSLFTNSN WFTFQDDRFG STPSDTAGSN 601: TIDVELNKTY NANTSSSDDD EVVVGEEDDD LTGNPKDNAL NTTETNFQME SPLDFFDFNT SQKAEEAFAE QPPEWVGWGE PSDMQASGTG LNPFIDDDDD 701: DDSKHIMNLD IPMAEVKSES MIPNGSERSL FEKDVEFVGV EPEGAEKAME QAMKEGIVGE AGVMKKNKEM AEDSKPEESS GGVKEFNDNN YWKVDQEVGV 801: LE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)