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AT1G07790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Histone superfamily protein
Curator
Summary (TAIR10)
Encodes a histone 2B (H2B) protein.
Computational
Description (TAIR10)
HTB1; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3418 Blast hits to 3391 proteins in 380 species: Archae - 0; Bacteria - 96; Metazoa - 2240; Fungi - 204; Plants - 476; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).
Protein Annotations
BioGrid:22534eggNOG:ENOG4111NV5eggNOG:KOG1744EMBL:AC007583
EMBL:AF332446EMBL:AY070760EMBL:AY088636EMBL:AY133638
EMBL:CP002684EnsemblPlants:AT1G07790EnsemblPlants:AT1G07790.1entrez:837293
Gene3D:1.10.20.10GeneID:837293Genevisible:Q9LQQ4GO:GO:0000788
GO:GO:0003677GO:GO:0006334GO:GO:0009507Gramene:AT1G07790.1
hmmpanther:PTHR23428HOGENOM:HOG000231213InParanoid:Q9LQQ4InterPro:IPR000558
InterPro:IPR007125InterPro:IPR009072KEGG:ath:AT1G07790KO:K11252
OMA:AMPIMNSPANTHER:PTHR23428PaxDb:Q9LQQ4Pfam:PF00125
Pfam:Q9LQQ4PhylomeDB:Q9LQQ4PIR:D86213PRIDE:Q9LQQ4
PRINTS:PR00621PRO:PR:Q9LQQ4PROSITE:PS00357ProteinModelPortal:Q9LQQ4
Proteomes:UP000006548RefSeq:NP_172258.1scanprosite:PS00357SMART:SM00427
SMR:Q9LQQ4STRING:3702.AT1G07790.1SUPFAM:SSF47113TAIR:AT1G07790
tair10-symbols:HTB1UniGene:At.22660UniGene:At.71460UniProt:Q9LQQ4
Coordinates (TAIR10) chr1:+:2413049..2413495
Molecular Weight (calculated) 16403.10 Da
IEP (calculated) 10.79
GRAVY (calculated) -0.81
Length 148 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPRAEKKPA EKKTAAERPV EENKAAEKAP AEKKPKAGKK LPPKEAGDKK KKRSKKNVET YKIYIFKVLK QVHPDIGISS KAMGIMNSFI NDIFEKLAQE
101: SSKLARYNKK PTITSREIQT AVRLVLPGEL AKHAVSEGTK AVTKFTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)