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AT1G07740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT5G16420.1); Has 40211 Blast hits to 12438 proteins in 276 species: Archae - 2; Bacteria - 44; Metazoa - 539; Fungi - 492; Plants - 37971; Viruses - 0; Other Eukaryotes - 1163 (source: NCBI BLink).
Protein Annotations
BioGrid:22529eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC007583
EMBL:AK176347EMBL:AY042798EMBL:BT008759EMBL:CP002684
EnsemblPlants:AT1G07740EnsemblPlants:AT1G07740.1entrez:837288Gene3D:1.25.40.10
GeneID:837288Genevisible:Q9LQQ1GO:GO:0005739Gramene:AT1G07740.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF734HOGENOM:HOG000241569InParanoid:Q9LQQ1
IntAct:Q9LQQ1InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9LQQ1
KEGG:ath:AT1G07740OMA:KASSHEPPaxDb:Q9LQQ1Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:PF13812Pfam:Q9LQQ1
Pfscan:PS51375PhylomeDB:Q9LQQ1PIR:G86212PRIDE:Q9LQQ1
PRO:PR:Q9LQQ1PROSITE:PS51375ProteinModelPortal:Q9LQQ1Proteomes:UP000006548
RefSeq:NP_172253.1SMR:Q9LQQ1STRING:3702.AT1G07740.1SUPFAM:SSF81901
TAIR:AT1G07740TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.14835
UniProt:Q9LQQ1
Coordinates (TAIR10) chr1:-:2399117..2400496
Molecular Weight (calculated) 52298.00 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.22
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MRRRLSSVLI NNQCIASQRH YHTSRPEKPT KKASSHEPTH KFTRKPWEEV PFLTDLKEIE DPEEALSLFH QYQEMGFRHD YPSYSSLIYK LAKSRNFDAV
101: DQILRLVRYR NVRCRESLFM GLIQHYGKAG SVDKAIDVFH KITSFDCVRT IQSLNTLINV LVDNGELEKA KSFFDGAKDM RLRPNSVSFN ILIKGFLDKC
201: DWEAACKVFD EMLEMEVQPS VVTYNSLIGF LCRNDDMGKA KSLLEDMIKK RIRPNAVTFG LLMKGLCCKG EYNEAKKLMF DMEYRGCKPG LVNYGILMSD
301: LGKRGRIDEA KLLLGEMKKR RIKPDVVIYN ILVNHLCTEC RVPEAYRVLT EMQMKGCKPN AATYRMMIDG FCRIEDFDSG LNVLNAMLAS RHCPTPATFV
401: CMVAGLIKGG NLDHACFVLE VMGKKNLSFG SGAWQNLLSD LCIKDGGVYC EALSEVISI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)