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AT1G07720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 3
Curator
Summary (TAIR10)
Encodes KCS3, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 3 (KCS3); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to cold, response to light stimulus, response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 12 (TAIR:AT2G28630.1); Has 2897 Blast hits to 2863 proteins in 795 species: Archae - 0; Bacteria - 1421; Metazoa - 0; Fungi - 2; Plants - 1311; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G07720-MONOMEREC:2.3.1.199eggNOG:ENOG410IH8SeggNOG:ENOG410Y9JSEMBL:AC007583EMBL:AF428349EMBL:AY062700
EMBL:AY128794EMBL:CP002684EnsemblPlants:AT1G07720EnsemblPlants:AT1G07720.1entrez:837286Gene3D:3.40.47.10GeneID:837286
Genevisible:Q9LQP8GO:GO:0005783GO:GO:0006633GO:GO:0009409GO:GO:0009416GO:GO:0016020GO:GO:0016747
Gramene:AT1G07720.1hmmpanther:PTHR31561hmmpanther:PTHR31561:SF24HOGENOM:HOG000238893InParanoid:Q9LQP8InterPro:IPR012392InterPro:IPR013601
InterPro:IPR013747InterPro:IPR016039iPTMnet:Q9LQP8KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:ath:AT1G07720KO:K15397
OMA:HLRLNEYPANTHER:PTHR31561PaxDb:Q9LQP8Pfam:PF08392Pfam:PF08541Pfam:Q9LQP8PIR:D86212
PIRSF:PIRSF036417PRIDE:Q9LQP8PRO:PR:Q9LQP8ProteinModelPortal:Q9LQP8Proteomes:UP000006548RefSeq:NP_172251.1STRING:3702.AT1G07720.1
SUPFAM:SSF53901TAIR:AT1G07720tair10-symbols:KCS3UniGene:At.14838UniPathway:UPA00094UniProt:Q9LQP8
Coordinates (TAIR10) chr1:-:2390970..2392406
Molecular Weight (calculated) 54338.30 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.15
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLLVMLLSL LVSYLIFKIW KRIDSKRDQN CYILDYQCHK PSDDRMVNTQ FSGDIILRNK HLRLNEYKFL LKAIVSSGIG EQTYAPRLFF EGREQRPTLQ
101: DGLSEMEEFY IDTIEKVLKR NKISPSEIDI LVVNVSMLNS TPSLSARIIN HYKMREDIKV FNLTAMGCSA SVISIDIVKN IFKTYKNKLA LVVTSESLSP
201: NWYSGNNRSM ILANCLFRSG GCAVLLTNKR SLSRRAMFKL RCLVRTHHGA RDDSFNACVQ KEDELGHIGV HLDKTLPKAA TRAFIDNLKV ITPKILPVTE
301: LLRFMLCLLL KKLRSSPSKG STNVTQAAPK AGVKAGINFK TGIDHFCIHT GGKAVIDAIG YSLDLNEYDL EPARMTLHRF GNTSASSLWY VLGYMEAKKR
401: LKRGDRVFMI SFGAGFKCNS CVWEVVRDLN VGEAVGNVWN HCINQYPPKS ILNPFFEKYG WIHEEEDPDT FKMPEGFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)