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AT1G07420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.558
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sterol 4-alpha-methyl-oxidase 2-1
Curator
Summary (TAIR10)
Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA
Computational
Description (TAIR10)
sterol 4-alpha-methyl-oxidase 2-1 (SMO2-1); FUNCTIONS IN: C-4 methylsterol oxidase activity, 4-alpha-methyl-delta7-sterol-4alpha-methyl oxidase activity; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 4-alpha-methyl-oxidase 2-2 (TAIR:AT2G29390.2); Has 2893 Blast hits to 2888 proteins in 513 species: Archae - 0; Bacteria - 699; Metazoa - 429; Fungi - 685; Plants - 484; Viruses - 3; Other Eukaryotes - 593 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G07420-MONOMERBioCyc:MetaCyc:AT1G07420-MONOMERBRENDA:1.14.13.72DNASU:837254EC:1.14.13.72eggNOG:COG3000eggNOG:KOG0873
EMBL:AC022464EMBL:AF346734EMBL:AK316820EMBL:AY087267EMBL:BT044610EMBL:CP002684EnsemblPlants:AT1G07420
EnsemblPlants:AT1G07420.1entrez:837254GeneID:837254Genevisible:Q8VWZ8GO:GO:0000254GO:GO:0005506GO:GO:0005789
GO:GO:0006633GO:GO:0009941GO:GO:0016021GO:GO:0016126GO:GO:0080065gramene_pathway:1.14.13.-gramene_pathway:1.14.13.72
gramene_pathway:PWY-6663gramene_pathway:PWY66-341gramene_plant_reactome:1119286gramene_plant_reactome:1119439gramene_plant_reactome:6873627gramene_plant_reactome:6873666gramene_plant_reactome:6873792
gramene_plant_reactome:6873834gramene_plant_reactome:6875077gramene_plant_reactome:6875120gramene_plant_reactome:6876022gramene_plant_reactome:6876210gramene_plant_reactome:6876218gramene_plant_reactome:6876434
gramene_plant_reactome:6876572gramene_plant_reactome:6876858hmmpanther:PTHR11863hmmpanther:PTHR11863:SF27HOGENOM:HOG000162289InParanoid:Q8VWZ8InterPro:IPR006694
KEGG:ath:AT1G07420KO:K14424OMA:FRAMGMRPaxDb:Q8VWZ8Pfam:PF04116Pfam:Q8VWZ8PhylomeDB:Q8VWZ8
PRIDE:Q8VWZ8PRO:PR:Q8VWZ8Proteomes:UP000006548Reactome:R-ATH-191273RefSeq:NP_563789.1RefSeq:NP_973777.1STRING:3702.AT1G07420.1
TAIR:AT1G07420tair10-symbols:ATSMO2tair10-symbols:SMO2-1TMHMM:TMhelixUniGene:At.27344UniGene:At.67216UniProt:Q8VWZ8
Coordinates (TAIR10) chr1:+:2277910..2280033
Molecular Weight (calculated) 30928.40 Da
IEP (calculated) 8.70
GRAVY (calculated) 0.10
Length 266 amino acids
Sequence (TAIR10)
(BLAST)
001: MASFVESGWQ YLVTHFSDFQ LACIGSFLLH ESVFFLSGLP FIFLERQGFL SKYKIQTKNN TPAAQGKCIT RLLLYHFSVN LPLMLASYPV FRAMGMRSSF
101: PLPSWKEVSA QILFYFIIED FVFYWGHRIL HSKWLYKNVH SVHHEYATPF GLTSEYAHPA EILFLGFATI VGPALTGPHL ITLWLWMVLR VLETVEAHCG
201: YHFPWSLSNF LPLYGGADFH DYHHRLLYTK SGNYSSTFVY MDWIFGTDKG YRRLKTLKEN GDMKQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)