AT1G07380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Neutral/alkaline non-lysosomal ceramidase | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Neutral/alkaline non-lysosomal ceramidase; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT5G58980.1); Has 713 Blast hits to 570 proteins in 199 species: Archae - 0; Bacteria - 295; Metazoa - 184; Fungi - 101; Plants - 78; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:2264829..2268306 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86776.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||
| Length | 779 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELSLVRLWN TCFPSFFYIS TVLFLLTGGG VYSHSEYLIG LGSYDITGPA ADVNMMGYAN MEQVASGIHF RLRARTFIVS EPQGKRVVFV NLDACMASQI 101: VKLKVIERLK ARYGDLYTEQ NVGISGIHTH AGPGGYLQYV VYIVTSLGFV RQSFDALVDG IENSIIQAHE NLRPGSIFLN NGELLDAGVN RSPSAYLNNP 201: SKERSKHKYN VDKEMTLLKF VDDQWGPVGS FNWFATHGTS MSRTNSLISG DNKGAASRFM EDWYEQNTAE RSYSEEFISD EIPRRVSSLI ENHQDSHHEL 301: LELASYFESQ PGKPVTRISS SARRVRSALR KADKPGFVSA FCQTNCGDVS PNVLGAFCLD TGLPCDFNHS TCGGKNEMCY GRGPGYPDEF ESTRIIGERQ 401: FKMALELFNK ASEQLQGKVD YRHVYVDFSQ LNVTLPKKDG KSEVVKTCPA AMGFAFAAGT TDGPGAFDFT QGDDKGNPFW RLVRNVLKTP DKKQIDCHYP 501: KPILLDTGEM TKPYDWAPSI LSLQVLRIGQ LFILSVPGEF TTMAGRRLRY AVKTQLKNSG NKDLSGEIHV VIAGLANGYS QYVTTFEEYQ VQRYEGASTL 601: YGPHTLSGYI QEFKKLSKSL VLDMPVQPGP QPPDLLDKQL SFLTPVMMDT TPSGDSFGDV ISDVPKNLSL KRGNGQVTVV FRSACPRNDL LTEGTFTLVE 701: RLEQKDKTWT PVYDDDDLCL RFKWSRHKKL SSRSQATVEW RIPESASPGV YRITHFGAAK KLFGSVHHFT GSSSAFVVT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)