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AT1G07280.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29670.1); Has 604 Blast hits to 369 proteins in 73 species: Archae - 4; Bacteria - 161; Metazoa - 2; Fungi - 2; Plants - 383; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEWZeggNOG:ENOG4111RQ5EMBL:AY065061EMBL:AY133574EMBL:CP002684EnsemblPlants:AT1G07280EnsemblPlants:AT1G07280.1
EnsemblPlants:AT1G07280.2EnsemblPlants:AT1G07280.3entrez:837239Gene3D:1.25.40.10GeneID:837239Gramene:AT1G07280.1Gramene:AT1G07280.2
Gramene:AT1G07280.3hmmpanther:PTHR26312hmmpanther:PTHR26312:SF87HOGENOM:HOG000241467InterPro:IPR011990InterPro:IPR013026KEGG:ath:AT1G07280
OMA:AGGHQMAPfam:PF13432Pfscan:PS50293PhylomeDB:Q8VZC8PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_001030984.1
RefSeq:NP_001117242.1RefSeq:NP_172208.2SMR:Q8VZC8STRING:3702.AT1G07280.1SUPFAM:SSF48452TAIR:AT1G07280UniGene:At.20235
UniGene:At.28743UniProt:Q8VZC8
Coordinates (TAIR10) chr1:+:2238505..2240991
Molecular Weight (calculated) 61787.40 Da
IEP (calculated) 5.11
GRAVY (calculated) -0.43
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVKVATSST FHQWVAHPIV HHSSSLSQTL ASSAVSSPSR RRIIGNDGRS SLSCRSVMQS QRLNPSSPFG TSSTNLRHSK SCELWESTKR PKTQLIRRAF
101: SANVDPFSEE EFAKKMQELT LKFQVSNEEE DNESDTRIDD YTRKMDIVGS HNNFRSDSME PPWPEMVQMS NIERKANSVD LPLSLRIIKR KLQMEEGVLN
201: QVGESACCSV KKAFSSMVFM IRELQSFTLH MRELLLFEDL QGILHRVRKE MQASFVWLFQ QVFSATPTLM VSVMILLANF TVYSIESNSA LAAAVSPPTT
301: LSFSFETTAE ISETQETNQK FDSSMVKTFS VSSPYGKTSF VGGGGGNNIP PPVQSGTDGD GSDQFRKSQF SSSSLGATSA DSDVSVSGQE EIRLWNSILE
401: ETAKMETLDH ETMKGMVSPV EARLEAEESM DYFKTELLYQ TGLSQEPGNV LLLANYAQFL YLIIHDYDRA EKYFKRAAKA EPADAEALNK YATFLWRARN
501: DIWRAEETYL EAISADPTNS VYSANYAHFL WNTGGDETCF PLDAPSQQNN TT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)