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AT1G07230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : non-specific phospholipase C1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
non-specific phospholipase C1 (NPC1); FUNCTIONS IN: hydrolase activity, acting on ester bonds; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C2 (TAIR:AT2G26870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G07230-MONOMEREC:3.1.-.-eggNOG:COG3511eggNOG:ENOG410IG2BEMBL:AB084291EMBL:AC067971EMBL:AY124005
EMBL:BT020583EMBL:CP002684EnsemblPlants:AT1G07230EnsemblPlants:AT1G07230.1entrez:837234GeneID:837234Genevisible:Q8L7Y9
GO:GO:0005576GO:GO:0016788Gramene:AT1G07230.1gramene_pathway:3.1.4.3gramene_pathway:LIPASYN-PWYhmmpanther:PTHR31956hmmpanther:PTHR31956:SF9
HOGENOM:HOG000192929InParanoid:Q8L7Y9InterPro:IPR007312KEGG:ath:AT1G07230KO:K01114OMA:HILGWLKPaxDb:Q8L7Y9
Pfam:PF04185Pfam:Q8L7Y9PhylomeDB:Q8L7Y9PIR:E86207PRIDE:Q8L7Y9PRO:PR:Q8L7Y9ProteinModelPortal:Q8L7Y9
Proteomes:UP000006548RefSeq:NP_172203.2STRING:3702.AT1G07230.1TAIR:AT1G07230tair10-symbols:NPC1UniGene:At.43894UniProt:Q8L7Y9
Coordinates (TAIR10) chr1:-:2220509..2222778
Molecular Weight (calculated) 60051.30 Da
IEP (calculated) 6.97
GRAVY (calculated) -0.39
Length 533 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFRRVLTTV ILFCYLLISS QSIEFKNSQK PHKIQGPIKT IVVVVMENRS FDHILGWLKS TRPEIDGLTG KESNPLNVSD PNSKKIFVSD DAVFVDMDPG
101: HSFQAIREQI FGSNDTSGDP KMNGFAQQSE SMEPGMAKNV MSGFKPEVLP VYTELANEFG VFDRWFASVP TSTQPNRFYV HSATSHGCSS NVKKDLVKGF
201: PQKTIFDSLD ENGLSFGIYY QNIPATFFFK SLRRLKHLVK FHSYALKFKL DAKLGKLPNY SVVEQRYFDI DLFPANDDHP SHDVAAGQRF VKEVYETLRS
301: SPQWKEMALL ITYDEHGGFY DHVPTPVKGV PNPDGIIGPD PFYFGFDRLG VRVPTFLISP WIEKGTVIHE PEGPTPHSQF EHSSIPATVK KLFNLKSHFL
401: TKRDAWAGTF EKYFRIRDSP RQDCPEKLPE VKLSLRPWGA KEDSKLSEFQ VELIQLASQL VGDHLLNSYP DIGKNMTVSE GNKYAEDAVQ KFLEAGMAAL
501: EAGADENTIV TMRPSLTTRT SPSEGTNKYI GSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)