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AT1G07210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:22550958 (2012): plastid
  • PMID:21841088 (2011): mitochondrion
  • PMID:21311031 (2011): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S18; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S18 (InterPro:IPR001648); Has 5527 Blast hits to 5527 proteins in 2078 species: Archae - 0; Bacteria - 4261; Metazoa - 44; Fungi - 19; Plants - 203; Viruses - 0; Other Eukaryotes - 1000 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0238eggNOG:KOG3162EMBL:AC067971EMBL:AF332408
EMBL:AK228540EMBL:CP002684EnsemblPlants:AT1G07210EnsemblPlants:AT1G07210.1
entrez:837232Gene3D:4.10.640.10GeneID:837232GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT1G07210.1HAMAP:MF_00270
hmmpanther:PTHR13479hmmpanther:PTHR13479:SF44HOGENOM:HOG000243519InterPro:IPR001648
KEGG:ath:AT1G07210OMA:ANEDPNQPfam:PF01084PhylomeDB:Q9LML3
PIR:C86207PRINTS:PR00974ProDom:PD002239Proteomes:UP000006548
RefSeq:NP_172201.1SMR:Q9LML3STRING:3702.AT1G07210.1SUPFAM:SSF46911
TAIR:AT1G07210TIGRfam:TIGR00165TIGRFAMs:TIGR00165UniGene:At.17129
UniGene:At.48162UniProt:Q9LML3
Coordinates (TAIR10) chr1:+:2215320..2216668
Molecular Weight (calculated) 29621.10 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.97
Length 261 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIARFATRS LNNVTFLRPF RPIVSRSLAT NANEDPNQNR SSFDSSDNLD SLFGDYTGND EKSNDFFQHL SKAEKDKRDF NGYNRSGGSR YSGGGSMSKD
101: ETFDPSSDGV DGKLKEAALA YNMDEGDGFK EYSFRPDFNN SWGMNNFPRM QKQMQNPRQN NSKSEVTTEE VLKNADFRNV RFLANFITEA GIIIKRKQTG
201: ISAKAQRKIA REIKTARAFG LMPFTTMGTK AFQFGKTMEN RDQDFEYEVL DDDDEFDEGN A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)