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AT1G07180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23841539 (2013): mitochondrion mitochondrial envelope
  • PMID:23841539 (2013): peroxisome mitochondrial envelope
  • PMID:18703057 (2008): mitochondrion
  • PMID:18703057 (2008): peroxisome
  • PMID:12972666 (2003): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alternative NAD(P)H dehydrogenase 1
Curator
Summary (TAIR10)
Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.
Computational
Description (TAIR10)
alternative NAD(P)H dehydrogenase 1 (NDA1); FUNCTIONS IN: NADH dehydrogenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: intrinsic to mitochondrial inner membrane, mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: alternative NAD(P)H dehydrogenase 2 (TAIR:AT2G29990.1); Has 9792 Blast hits to 9601 proteins in 2135 species: Archae - 248; Bacteria - 7524; Metazoa - 53; Fungi - 647; Plants - 379; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G07180-MONOMEREC:1.6.5.9eggNOG:COG1252eggNOG:KOG2495EMBL:AC067971EMBL:AK118982EMBL:AY084663
EMBL:BT005564EMBL:CP002684EnsemblPlants:AT1G07180EnsemblPlants:AT1G07180.1entrez:837229Gene3D:3.50.50.60GeneID:837229
Genevisible:Q8GWA1GO:GO:0003954GO:GO:0003959GO:GO:0005739GO:GO:0005759GO:GO:0005777GO:GO:0031304
GO:GO:0055114GO:GO:0071482Gramene:AT1G07180.1hmmpanther:PTHR22912HOGENOM:HOG000182501InParanoid:Q8GWA1InterPro:IPR023753
iPTMnet:Q8GWA1KEGG:ath:AT1G07180KO:K17871OMA:ADTLYENPaxDb:Q8GWA1Pfam:PF07992Pfam:Q8GWA1
PhylomeDB:Q8GWA1PIR:H86206PRIDE:Q8GWA1PRO:PR:Q8GWA1ProteinModelPortal:Q8GWA1Proteomes:UP000006548RefSeq:NP_563783.1
SMR:Q8GWA1STRING:3702.AT1G07180.1SUPFAM:SSF51905TAIR:AT1G07180tair10-symbols:ATNDI1tair10-symbols:NDA1UniGene:At.42309
UniProt:Q8GWA1
Coordinates (TAIR10) chr1:+:2204414..2206773
Molecular Weight (calculated) 56631.30 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.14
Length 510 amino acids
Sequence (TAIR10)
(BLAST)
001: MLWIKNLARI SQTTSSSVGN VFRNPESYTL SSRFCTALQK QQVTDTVQAK EDVVNALEPQ RYDGLAPTKE GEKPRVLVLG SGWAGCRVLK GIDTSIYDVV
101: CVSPRNHMVF TPLLASTCVG TLEFRSVAEP ISRIQPAISR EPGSYYFLAN CSKLDADNHE VHCETVTEGS STLKPWKFKI AYDKLVLACG AEASTFGING
201: VLENAIFLRE VHHAQEIRRK LLLNLMLSEV PGIGEDEKKR LLHCVVVGGG PTGVEFSGEL SDFIMKDVRQ RYSHVKDDIR VTLIEARDIL SSFDDRLRHY
301: AIKQLNKSGV KLVRGIVKEV KPQKLILDDG TEVPYGPLVW STGVGPSSFV RSLDFPKDPG GRIGIDEWMR VPSVQDVFAI GDCSGYLEST GKSTLPALAQ
401: VAEREGKYLA NLFNVMGKAG GGRANSAKEM ELGEPFVYKH LGSMATIGRY KALVDLRESK EGKGISMAGF LSWFIWRSAY LTRVVSWRNR FYVAINWLTT
501: FVFGRDISRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)