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AT1G07170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHF5-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PHF5-like protein; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT2G30000.1); Has 420 Blast hits to 420 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 128; Plants - 86; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JIMeggNOG:KOG1705EMBL:AC067971EMBL:AK229703
EMBL:AY088771EMBL:BT008548EMBL:BT008644EMBL:CP002684
EnsemblPlants:AT1G07170EnsemblPlants:AT1G07170.1EnsemblPlants:AT1G07170.2EnsemblPlants:AT1G07170.3
EnsemblPlants:AT2G30000.1entrez:817551entrez:837228ExpressionAtlas:Q0WMV8
GeneID:817551GeneID:837228Genevisible:Q0WMV8Gramene:AT1G07170.1
Gramene:AT1G07170.2Gramene:AT1G07170.3Gramene:AT2G30000.1hmmpanther:PTHR13120
InParanoid:Q0WMV8InterPro:IPR005345KEGG:ath:AT1G07170KEGG:ath:AT2G30000
KO:K12834PANTHER:PTHR13120PaxDb:Q0WMV8Pfam:P0DI19
Pfam:PF03660Pfam:Q0WMV8PhylomeDB:Q0WMV8PIR:G86206
PIRSF:PIRSF016468PRIDE:Q0WMV8PRO:PR:Q0WMV8ProteinModelPortal:Q0WMV8
Proteomes:UP000006548Reactome:R-ATH-72163RefSeq:NP_001077473.1RefSeq:NP_001184928.1
RefSeq:NP_563782.1RefSeq:NP_565691.1SMR:Q0WMV8STRING:3702.AT2G30000.1
TAIR:AT1G07170UniGene:At.12753UniGene:At.42310UniProt:P0DI19
UniProt:Q0WMV8
Coordinates (TAIR10) chr1:+:2200686..2201018
Molecular Weight (calculated) 12429.20 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.43
Length 110 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKHHPDLIM CRKQPGIAIG RLCEKCDGKC VICDSYVRPC TLVRICDECN YGSFQGRCVI CGGVGISDAY YCKECTQQEK DRDGCPKIVN LGSAKTDLFY
101: ERKKYGFKKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)