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AT1G07090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF640)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LIGHT SENSITIVE HYPOCOTYLS 6 (LSH6); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G58500.1); Has 311 Blast hits to 311 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWC1eggNOG:ENOG410YB00EMBL:AC067971EMBL:AY086869EMBL:BT003842EMBL:BT020303EMBL:BT024584
EMBL:CP002684EnsemblPlants:AT1G07090EnsemblPlants:AT1G07090.1entrez:837220GeneID:837220Genevisible:Q9LMK2GO:GO:0003677
GO:GO:0005634GO:GO:0006355GO:GO:0009299GO:GO:0009886Gramene:AT1G07090.1hmmpanther:PTHR31165hmmpanther:PTHR31165:SF6
HOGENOM:HOG000239606InParanoid:Q9LMK2InterPro:IPR006936KEGG:ath:AT1G07090OMA:DACNVGAPaxDb:Q9LMK2Pfam:PF04852
Pfam:Q9LMK2Pfscan:PS51697PhylomeDB:Q9LMK2PIR:G86205PRIDE:Q9LMK2PRO:PR:Q9LMK2PROSITE:PS51697
Proteomes:UP000006548RefSeq:NP_563780.1STRING:3702.AT1G07090.1TAIR:AT1G07090tair10-symbols:LSH6UniGene:At.42313UniProt:Q9LMK2
Coordinates (TAIR10) chr1:-:2174202..2174792
Molecular Weight (calculated) 21532.40 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.73
Length 196 amino acids
Sequence (TAIR10)
(BLAST)
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)