suba logo
AT1G07080.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gamma interferon inducible lysosomal thiol reductase GILT (InterPro:IPR004911), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: gamma interferon responsive lysosomal thiol (GILT) reductase family protein (TAIR:AT5G01580.1); Has 470 Blast hits to 463 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 320; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IDTeggNOG:KOG3160EMBL:AY049308EMBL:AY054145EMBL:CP002684EnsemblPlants:AT1G07080EnsemblPlants:AT1G07080.1
entrez:837219GeneID:837219GO:GO:0005773Gramene:AT1G07080.1hmmpanther:PTHR13234hmmpanther:PTHR13234:SF8HOGENOM:HOG000238423
InterPro:IPR004911InterPro:IPR012336KEGG:ath:AT1G07080OMA:QHGAFECPANTHER:PTHR13234Pfam:PF03227PhylomeDB:Q93VQ6
Proteomes:UP000006548Reactome:R-ATH-2132295RefSeq:NP_563779.1STRING:3702.AT1G07080.1SUPFAM:SSF52833TAIR:AT1G07080UniGene:At.22572
UniProt:Q93VQ6
Coordinates (TAIR10) chr1:+:2170069..2171861
Molecular Weight (calculated) 29699.50 Da
IEP (calculated) 6.49
GRAVY (calculated) 0.01
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MASMPSKLLP VLVCYVFLFP FASSSDYSGV SLPSSSPKVS VGLYYESLCP YCSSFIVNHL AKLFEDDLIS IVDLHLSPWG NTKLRSDNVT AVCQHGAFEC
101: FLDTVEACAI DAWPKVSDHF PFIYCVEKLV TEHKYDKWET CYEKLNLNSK PVADCLSSGH GNELALHYAA ETNALQPPHK YVPWVVVDGQ PLYEDYENFI
201: SYICKAYKGN KVPGACTKYA TGNFIRSVKL KRSPLVSWKG VNKMWDVLER ITTSLSSYID ITGLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)